DRSC/TRiP Functional Genomics Resources

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Protein Alignment mor and smarcc1a

DIOPT Version :9

Sequence 1:NP_524373.1 Gene:mor / 41942 FlyBaseID:FBgn0002783 Length:1209 Species:Drosophila melanogaster
Sequence 2:XP_003200294.1 Gene:smarcc1a / 403020 ZFINID:ZDB-GENE-080514-3 Length:1089 Species:Danio rerio


Alignment Length:1205 Identity:532/1205 - (44%)
Similarity:715/1205 - (59%) Gaps:148/1205 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NTLGPKKDGSPNIDFFQSPETLQGFESIRQWLQKNCKKYLAHSSEPITKESLAQLLIHFLQYVEA 66
            :::|.||||.|:..:::|.||:...|::|.|:.|:.||::...|.  |.::||.|::..||:.|.
Zfish    25 SSIGRKKDGGPSSKYWESSETVSQLETVRLWIGKHYKKHVQTDSP--TSKTLAALVVQLLQFQED 87

  Fly    67 KLGKNSADPPATRIPMRCFLDFKSGGGLCIIFSTMFRFRAEQRGKKFDFSIGKNPTRKDPNIQLL 131
            ..|:..::|..|::|.:.|||||.||.||.|..:.::|::||..::||.   :||:|.|.|:::.
Zfish    88 AFGRRVSNPALTKLPAKSFLDFKPGGALCHILGSAYKFKSEQGWRRFDL---QNPSRMDRNVEMF 149

  Fly   132 IEIEQALVEADLYRIPYIYIRPEIEKGFEGKLREILDNRRVEIVSDEEDATHIVYP-VVDPHPDE 195
            :.||:.||:.:....|.:||..::|:....||::|:...:..|..|:..||||:|| ......:|
Zfish   150 MTIEKTLVQNNSLTRPIVYIVSDVEQKQANKLKDIIKRHQGTITEDKSKATHIIYPSPTQMEEEE 214

  Fly   196 YARPIFKRGGHVMLHWYYFPESYDSWAVNNFDLPDHIPENPESPAERWRVSASWIVDLEQYNEWM 260
            :.||:.::...|::||.|:|:|||.| |:..|: |...|:|.|..:.|||.|.|::|.:.:||||
Zfish   215 WLRPVMRKDKQVLVHWGYYPDSYDIW-VSTSDV-DADVEDPPSSEKPWRVHAKWVIDTDAFNEWM 277

  Fly   261 AEEDYEVDEQGKKKTHKQRMSIDDIMSFGDEKKKPAASSGGGKQKRRRSPSPASSASTSKPGKRK 325
            .||||||||..|..:.:||:...:.:|.....:|...|...|| ||||||||.|:...|:...:|
Zfish   278 NEEDYEVDENKKPVSFRQRIFPGEDVSSRTPDRKERKSLVAGK-KRRRSPSPPSTPVESRKKGKK 341

  Fly   326 RSPAVVHKKSR---NDDDDEDLTRDLDDPPAEPNVQEVHKANAALQSTASPAPGGKSRGDNDMMP 387
            .:|....::..   :|:.|||.|:||:||...|.::||.......|           :.|::..|
Zfish   342 GNPGSQWRRRGQPIDDEQDEDSTKDLEDPSPVPGMEEVTLPKNVNQ-----------KKDSENTP 395

  Fly   388 IKGGTMTDLDDEMTGGSAAQAMSTGDGENSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHIIV 452
            :|||...||||:            .|...:..||..|..:..|.:...  |.||||||||||||:
Zfish   396 VKGGIHNDLDDQ------------EDDSVTSGGKEDDEQSKAEVNRLI--DSEDNVTEQTHHIII 446

  Fly   453 PSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLA 517
            |||:|||||||||.||:||:|||||.||||||||||:||||||||||||||.||||||:|||||.
Zfish   447 PSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLT 511

  Fly   518 GDVCAIMRVHAFLEQWGLINYQIDADVRPTPMGPPPTSHFHILSDTPSGLQSINPQKTQQPSAAK 582
            |||||:||||||||||||:|||:||:.||.||||||||||::|:||||||..::.:..|.| .|:
Zfish   512 GDVCAVMRVHAFLEQWGLVNYQVDAESRPLPMGPPPTSHFNVLADTPSGLVPLHHRPPQVP-PAQ 575

  Fly   583 TLLDLDKKPLGKDGGLELGDKSGLTGIKTEALENGAAGGLSSGVSQFGLKLDQYAKKPAAMRNRT 647
            .:|:..:|  |||              |...|:|            |||:.|.|:||  .::.:.
Zfish   576 QMLNFPEK--GKD--------------KPTDLQN------------FGLRTDIYSKK--NLKGKG 610

  Fly   648 AASMAREWTDQETLLLLEGLEMHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDDGGFLGP 712
            ||. .|:||:||||||||.|||:|||||||.||||||||||||||||||||||.|||.....|||
Zfish   611 AAG-GRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDQYLESSDASLGP 674

  Fly   713 LACQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHLKNVEKAS 777
            ||.||||||:||||:|||||||||||||||||||||||::||:.:::||||.:::.|:|.|::|:
Zfish   675 LAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALDEFSRVREEVPAELVEAHVKKVQEAA 739

  Fly   778 -AGGKFNPNFGLANSGIAGTGNDKDDEEGKEGGASASAGGSDEEMKDLSKKDDDAKSKDNTKSDK 841
             :.||.:|.|||.:||||||..::.::               .|..:..|.|.|:   |:.:.||
Zfish   740 RSTGKVDPAFGLESSGIAGTAPEEPEK---------------TEPTETEKMDTDS---DSQQPDK 786

  Fly   842 TNTNTDSSSTSSSATGNTNNTDKKPKESSGSSPSGDKSAIKSDKSNKSSPTETAAAASGGEVDIK 906
            ..:..::...|.||        :||.|:       :|..|::  :.||.|.|...:.:|.....:
Zfish   787 AESKDEAEKPSESA--------EKPAET-------EKEKIET--TEKSEPQEEEESEAGETKTAE 834

  Fly   907 TEDSSGDGETKDGTEAKEGTGTGTGPLAVPKEGTFSENNMQTAAAAALASAAVKAKHLAALEERK 971
            .|.......|::|.|.:|....|...|    |....|.|:.|||||||||||.|||||||:||||
Zfish   835 KEKEEAMETTEEGKEDEEEQEEGKKKL----ELDIGEGNIATAAAAALASAATKAKHLAAVEERK 895

  Fly   972 IKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQ 1036
            |||||||||||||||||:|||||||||..|:||:|.||.|||||:||||.||:||||.||.:|||
Zfish   896 IKSLVALLVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQ 960

  Fly  1037 QAHHRLQQELQGQAAAGSMILPQQQQLPQAQQPQQQQQTLPPHPHLAQQQQLPPHPHQLPPQSQP 1101
            |    ::|:...|..||....|.....|....|.....  |.||    ....||..|.:.|...|
Zfish   961 Q----MEQQAAVQQNAGGHHGPPPHGPPPGMHPGHPGH--PGHP----GPGFPPMHHPMGPHHTP 1015

  Fly  1102 LAGP-TAQHQPLPPHVVSSPNGAPFAAPPISLTGGLPPGAPTAIVTNPSDQTGPVAAGAAQSQAP 1165
            ..|| ....||:|..::|.|       ||   .||:.|            ..||...|......|
Zfish  1016 QTGPMVGPGQPMPGRMMSGP-------PP---QGGIAP------------MMGPRHPGPPNGMYP 1058

  Fly  1166 TPMDTTPPSSGPVSDANAPPGSAMPPGGIPPANTA 1200
            .|   .||::.|   ...|||...||..:|....|
Zfish  1059 GP---PPPTAQP---DGMPPGPVGPPPSVPATRAA 1087

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
morNP_524373.1 SWIRM-assoc_2 6..446 CDD:293105 154/443 (35%)
RSC8 417..>742 CDD:227584 208/324 (64%)
SWIRM 453..538 CDD:282311 73/84 (87%)
SWIRM-assoc_3 738..801 CDD:293107 35/63 (56%)
SWIRM-assoc_1 962..1031 CDD:293104 56/68 (82%)
smarcc1aXP_003200294.1 SWIRM-assoc_2 29..440 CDD:293105 154/443 (35%)
RSC8 439..>704 CDD:227584 198/296 (67%)
SWIRM 447..532 CDD:282311 73/84 (87%)
SWIRM-assoc_3 700..760 CDD:293107 34/59 (58%)
SWIRM-assoc_1 887..958 CDD:293104 57/70 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 301 1.000 Domainoid score I1379
eggNOG 1 0.900 - - E1_COG5259
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 946 1.000 Inparanoid score I328
OMA 1 1.010 - - QHG55866
OrthoDB 1 1.010 - - D289848at33208
OrthoFinder 1 1.000 - - FOG0001152
OrthoInspector 1 1.000 - - otm25780
orthoMCL 1 0.900 - - OOG6_100909
Panther 1 1.100 - - LDO PTHR12802
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3405
SonicParanoid 1 1.000 - - X781
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.870

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