DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbf2 and Rbl1

DIOPT Version :9

Sequence 1:NP_524372.1 Gene:Rbf2 / 41941 FlyBaseID:FBgn0038390 Length:783 Species:Drosophila melanogaster
Sequence 2:XP_038961767.1 Gene:Rbl1 / 680111 RGDID:1595511 Length:1063 Species:Rattus norvegicus


Alignment Length:1066 Identity:229/1066 - (21%)
Similarity:384/1066 - (36%) Gaps:351/1066 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EGEAETLVRRFSVS--CEQLELEARIQQSALSTYHRLDAVNGLSTSEADAQEWLCCAVYSELQRS 69
            ||.|.....|.::.  |::|.|:   :.||........|:.|..:.|.:...||.|::|...::|
  Rat     9 EGAAAVAAAREALQALCQELNLD---EGSAAEALDDFTAIRGNYSLEGEVIHWLACSLYVACRKS 70

  Fly    70 KMRDIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLTQNENTFQLEVEELR 134
            .:..:.:.:.|.|       |  |||||:|||.|:::.||..:|:.|..::.....|:..:|.|.
  Rat    71 IIPTVGKGVMEGN-------C--VSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLE 126

  Fly   135 CRLGITSTLLRHYKHIFRSLFVHPGKGADPGAANHYQA--------LYEFGWLLFLVIRNELPGF 191
            ....:::.:.:.::.||..:|.:|.:.......:..|.        |:.|.|.||:..:......
  Rat   127 RNFEVSTVIFKKFEPIFLDIFQNPYEELPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMI 191

  Fly   192 AITNLINGCQVLVCTMDLLFVNALEVP-RSVVIRREFSGVPKNWDTEDFN-----PILLNKYSVL 250
            . .:|:|...:|:|.:||:|.||:..| |..::...|.|:|.::...:|.     |.::   :||
  Rat   192 G-DDLVNSYHLLLCCLDLIFANAIMCPNRRDLLNPSFKGLPSDFHAVNFKAAEEPPCII---AVL 252

  Fly   251 EALGE-LIPELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIK-EGMLDI-----NLEN 308
            ..|.: |:.|  |||:   |..:| |..|....|          ::|:| |.:||:     |.:.
  Rat   253 CDLHDGLLVE--AKGI---KEHYF-KPYISKLFD----------KKILKGECLLDLSSFTDNSKA 301

  Fly   309 LNRKYTNQVADISEMDERVLLSVQGAIETKGDSPK---SPQLAFQTSSSPSHRKLSTH-----DL 365
            :|::|...|..:.:.|||:.|... |.|..|...|   ..|....||.:.....|..|     ..
  Rat   302 VNKEYEEYVLTVGDFDERIFLGAD-AEEEIGTPRKFAADTQFGKLTSQASVDCNLQQHFEKKRSF 365

  Fly   366 PASLPLSIIKAFPKKE-------DADKIVNYLD------------------------------QT 393
            ..|.||:..:...:||       .|.:.|:.|.                              :.
  Rat   366 APSTPLTGRRYLQEKEAVTTPVASATQSVSRLQSIVAGLKSAPSEQLLTIFESCMRNPMGNIVKI 430

  Fly   394 LEEMNRTFTMAVKDFLD------AELSGKRFRQARGLYYKYLQKILGPELVQKPQLKIGQLMKQR 452
            ::.:..||........|      .:.:..|.:.|..||||.|:.|:..|..:...:.:..|::|.
  Rat   431 VKGIGETFCQHYTQSTDKQPGSHIDFAVNRLKLAEILYYKILETIMVQETRRLHGMDMSVLLEQD 495

  Fly   453 KLTAALLACCLELALHVHHKLVEGLRFPFVLHCFSLDAYDFQKILELVVRYDHGFLGRELIKHLD 517
            ....:|||||||:.|..:.   ....||:::....|..:.|.|::|:|:|.:.| |.|:::|||:
  Rat   496 IFHRSLLACCLEIVLFAYS---SPRTFPWIIDVLGLQPFYFYKVIEVVIRSEEG-LSRDMVKHLN 556

  Fly   518 VVEEMCLDSLIFRKSSQLWWELNQRL-------------------------------------PR 545
            .:||..|:||.:..:|.||..|....                                     ||
  Rat   557 SIEEQILESLAWTNNSALWEALRASANKVPSCEEVIFPNNFEIGNGGSVQGHLPMMPMSPIIHPR 621

  Fly   546 YKEVDAE---------------------------------------------------------- 552
            .|||..:                                                          
  Rat   622 VKEVRTDSGSLRKDMQPLSPISVHERYSSPAAGSAKRRLFGDDPPKETLMEKIMAEGTQLKIAPS 686

  Fly   553 ------------------------------------------------------TEDKENFS--- 560
                                                                  |:|....|   
  Rat   687 SVTAESLSISPGQALLTMATTTVTGTTGRKVTVPLHGIANDAGEITLVPISMNTTQDSTAESLVS 751

  Fly   561 --------------------------------TGS-SICLRKFYGLANRRLLLLCKSLCLVDSF- 591
                                            ||| ::..||.|.||:.||..||..|.:.:.. 
  Rat   752 LTAQSLIGASPKQTHLTKTQDAPLTGISKPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELR 816

  Fly   592 PQIWHLAEHSFTL-ESSRLLRNRHLDQLLLCAIHLHVRLEKLHLTFSMIIQHYRRQPHFRRSAYR 655
            .:||...|  ||| ....|:::||||||||||.::..::.|...||..|::.||.||......||
  Rat   817 RKIWTCFE--FTLVHCPDLMKDRHLDQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYR 879

  Fly   656 EVSLG---------NG-------------------------QTADIITFYNSVYVQSMGNYGRHL 686
            .|.|.         ||                         :..|:|.|||::||..:.::    
  Rat   880 SVLLKSIPGEVVAYNGDYEMTDGDIEDATKTPNCSSEPVKEERGDLIKFYNAIYVGRVKSF---- 940

  Fly   687 ECAQTRKSLEESQSNVGILTETTSNELSMRANISISSPPPPRVCQSGSCSSHPPSSPAASPLSLQ 751
                   :|:...||...:.:  :..||...:|......|.|:.|..|....|..:  ||.|:.:
  Rat   941 -------ALKYDLSNQDHIMD--APPLSPFPHIKQQPGSPRRISQQHSIYVSPHKN--ASGLTPR 994

  Fly   752 SSPNVKRAASSNDLMREIKRPNILRR 777
            |:...|...|.:..:::|.  |::|:
  Rat   995 SALLYKFNGSPSKSLKDIN--NMIRQ 1018

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbf2NP_524372.1 DUF3452 83..210 CDD:288762 32/134 (24%)
RB_A 380..536 CDD:280101 47/198 (24%)
CYCLIN 564..679 CDD:294043 48/150 (32%)
Rbl1XP_038961767.1 DUF3452 77..209 CDD:403219 34/141 (24%)
RB_A 385..578 CDD:396434 47/196 (24%)
CYCLIN_RBL1 780..944 CDD:410308 52/176 (30%)
Rb_C 956..>1041 CDD:401034 17/67 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341019
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1010
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46367
OrthoDB 1 1.010 - - D113612at2759
OrthoFinder 1 1.000 - - FOG0002362
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13742
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.820

Return to query results.
Submit another query.