DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbf2 and RBL1

DIOPT Version :9

Sequence 1:NP_524372.1 Gene:Rbf2 / 41941 FlyBaseID:FBgn0038390 Length:783 Species:Drosophila melanogaster
Sequence 2:XP_024307724.1 Gene:RBL1 / 5933 HGNCID:9893 Length:1105 Species:Homo sapiens


Alignment Length:1104 Identity:228/1104 - (20%)
Similarity:384/1104 - (34%) Gaps:395/1104 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GEAETLVRRFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTSEADAQEWLCCAVYSELQRSKMR 72
            |||      ....|::|.|:   :.||........|:.|..:.|.:...||.|::|...::|.:.
Human    18 GEA------LQALCQELNLD---EGSAAEALDDFTAIRGNYSLEGEVTHWLACSLYVACRKSIIP 73

  Fly    73 DIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLTQNENTFQLEVEELRCRL 137
            .:.:.|.|.|       |  |||||:|||.|:::.||..:|:.|..::.....|:..:|.|....
Human    74 TVGKGIMEGN-------C--VSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNF 129

  Fly   138 GITSTLLRHYKHIFRSLFVHPGKGADPGAANHYQA--------LYEFGWLLFLVIRN-------- 186
            .:::.:.:.|:.||..:|.:|.:.......:..|.        |:.|.|.||:..:.        
Human   130 EVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGKMTLSVVL 194

  Fly   187 ----------ELPGFAI------------------TNLINGCQVLVCTMDLLFVNALEVP-RSVV 222
                      ::.||..                  .:|:|...:|:|.:||:|.||:..| |..:
Human   195 HFYSGNLVLFDMRGFWFLCLFFFFFPYKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDL 259

  Fly   223 IRREFSGVPKNWDTEDFN-----PILLNKYSVLEALGE-LIPELPAKGVVQMKNAFFHKALIMLY 281
            :...|.|:|.::.|.||.     |.::   :||..|.: |:.|  |||:   |..:| |..|...
Human   260 LNPSFKGLPSDFHTADFTASEEPPCII---AVLCELHDGLLVE--AKGI---KEHYF-KPYISKL 315

  Fly   282 MDHSLVGDDTHMREIIK-EGMLDI-----NLENLNRKYTNQVADISEMDERVLL--SVQGAIETK 338
            .|          |:|:| |.:||:     |.:.:|::|...|..:.:.|||:.|  ..:..|.|.
Human   316 FD----------RKILKGECLLDLSSFTDNSKAVNKEYEEYVLTVGDFDERIFLGADAEEEIGTP 370

  Fly   339 GDSPKSPQLAFQTSSSPSHRKLSTH-----DLPASLPL--------------------------- 371
            ....:...|...|:.:.....|..|     ....|.||                           
Human   371 RKFTRDTPLGKLTAQANVEYNLQQHFEKKRSFAPSTPLTGRRYLREKEAVITPVASATQSVSRLQ 435

  Fly   372 SIIKAFPKKEDADKIVNYLD-----------QTLEEMNRTFTMAVKDFLD------AELSGKRFR 419
            ||:... |...:|:::|..:           :.|:.:..||........|      .:.:..|.:
Human   436 SIVAGL-KNAPSDQLINIFESCVRNPVENIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLK 499

  Fly   420 QARGLYYKYLQKILGPELVQKPQLKIGQLMKQRKLTAALLACCLELALHVHHKLVEGLRFPFVLH 484
            .|..||||.|:.::..|..:...:.:..|::|.....:|:|||||:.|..:.   ....||:::.
Human   500 LAEILYYKILETVMVQETRRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYS---SPRTFPWIIE 561

  Fly   485 CFSLDAYDFQKILELVVRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQRL------ 543
            ..:|..:.|.|::|:|:|.:.| |.|:::|||:.:||..|:||.:...|.||..|....      
Human   562 VLNLQPFYFYKVIEVVIRSEEG-LSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTC 625

  Fly   544 -------------------------------PRYKEVDAE------------------------- 552
                                           ||.|||..:                         
Human   626 EEVIFPNNFETGNGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPLSPISVHERYSSPTA 690

  Fly   553 ----------------------------------------------------------------- 552
                                                                             
Human   691 GSAKRRLFGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVTGTTGHKV 755

  Fly   553 --------------------------------------------------TEDKENFSTG----- 562
                                                              |:.:|..|||     
Human   756 TIPLHGVANDAGEITLIPLSMNTNQESKVKSPVSLTAHSLIGASPKQTNLTKAQEVHSTGINRPK 820

  Fly   563 --SSICL--RKFYGLANRRLLLLCKSLCLVDSF-PQIWHLAEHSFTL-ESSRLLRNRHLDQLLLC 621
              .|:.|  ||.|.||:.||..||..|.:.:.. .:||...|  ||| ....|:::|||||||||
Human   821 RTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFE--FTLVHCPDLMKDRHLDQLLLC 883

  Fly   622 AIHLHVRLEKLHLTFSMIIQHYRRQPHFRRSAYREVSL--------------------------- 659
            |.::..::.|...||..|::.||.||......||.|.|                           
Human   884 AFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPREVVAYNKNINDDFEMIDCDLED 948

  Fly   660 -------GNG----QTADIITFYNSVYVQSMGNYGRHLECAQTRKSLEESQSNVGILTETTSNEL 713
                   .:|    :..|:|.|||::||..:.::....:.|.....::             :..|
Human   949 ATKTPDCSSGPVKEERGDLIKFYNTIYVGRVKSFALKYDLANQDHMMD-------------APPL 1000

  Fly   714 SMRANISISSPPPPRVCQSGSCSSHPPSSPAASPLSLQSSPNVKRAASSNDLMREIKRPNILRR 777
            |...:|......|.|:.|..|....|..:  .|.|:.:|:...|...|.:..:::|.  |::|:
Human  1001 SPFPHIKQQPGSPRRISQQHSIYISPHKN--GSGLTPRSALLYKFNGSPSKSLKDIN--NMIRQ 1060

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbf2NP_524372.1 DUF3452 83..210 CDD:288762 35/170 (21%)
RB_A 380..536 CDD:280101 43/172 (25%)
CYCLIN 564..679 CDD:294043 49/156 (31%)
RBL1XP_024307724.1 DUF3452 77..246 CDD:314758 38/177 (21%)
RB_A 422..615 CDD:307805 48/197 (24%)
RB_B 824..979 CDD:307804 49/156 (31%)
Rb_C 998..>1083 CDD:312478 16/67 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165147367
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1010
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7132
OMA 1 1.010 - - QHG46367
OrthoDB 1 1.010 - - D113612at2759
OrthoFinder 1 1.000 - - FOG0002362
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13742
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
98.770

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