DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbf2 and Rbf

DIOPT Version :9

Sequence 1:NP_524372.1 Gene:Rbf2 / 41941 FlyBaseID:FBgn0038390 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_525036.2 Gene:Rbf / 31027 FlyBaseID:FBgn0015799 Length:845 Species:Drosophila melanogaster


Alignment Length:830 Identity:231/830 - (27%)
Similarity:379/830 - (45%) Gaps:136/830 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ETLVRRFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTSEADAQEWLCCAVYSELQRSKMRDIR 75
            |.:...::..|..|.::   :|:.|..|.....|:...:.|..|..|:|||:|:..:|:.    .
  Fly    26 EMINAEYTNLCRDLNMD---RQTELQGYETYLEVSQRCSMEGTASHWMCCAIYTACRRTS----T 83

  Fly    76 ESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLTQNENTFQLEVEELRCRLGIT 140
            .::...|..|..||   |||..|||..||::.:|..:::.|..:......|..|:|:|..:..||
  Fly    84 PTVTGQNAVVKGNC---VSLNNLLRCCKMSIYEFKTKIKQWCDMANLPQEFVNEIEDLDRKFSIT 145

  Fly   141 STLLRHYKHIFRSLFVHPGKGADPGAANH----------------YQALYEFGWLLFLVIRNELP 189
            ..|.:.::.|...:|..|     |....|                |..|.:..|.|||..:|:.|
  Fly   146 FMLHKRFRIIMDMIFSCP-----PNEKKHSKYISLHGNHAHGKCSYIKLDDICWRLFLCAKNQKP 205

  Fly   190 GFAITNLINGCQVLVCTMDLLFVNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVLEALG 254
            ...: :|:....:::|.:||::.|.|...|:.:|..:|.|:|.||...||..   |.:.:|....
  Fly   206 SNTV-DLVTSYNLMICCIDLIYNNVLAEKRTDLINPKFEGLPSNWTELDFRH---NPHCILSNFC 266

  Fly   255 ELIPELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIKEGMLDINLENLNRKYTNQVAD 319
            ::..|..|     ||...|.:.:...:...::.|:...|..::.....:.||::||..|...|..
  Fly   267 DMTEEAKA-----MKATTFRQIMSSFFQASTIYGNKDTMLGLLANENFERNLKSLNISYEQYVLS 326

  Fly   320 ISEMDERVLLSVQGAIETK-GDSPKSPQLAFQTSSSPSHRKLSTHDLPASLPLS----------- 372
            :.|.|||:|.:......|. .|....|.:      :|..||   .||||...::           
  Fly   327 VGEFDERILSAYDAGEHTALNDQSLRPPV------TPLTRK---QDLPAQPAMAGDKFEPVRNAT 382

  Fly   373 ----IIKAFPK--------KEDADKIVNYLDQTLEEMNRTFTMAVKDFLDAELSGKRFRQARGLY 425
                .:.||.:        |:..::::..|...:||:.:.| :|.....:|:   .||:.|:..:
  Fly   383 NNVKQLSAFGRITEPTDFVKQAGEEVIAKLLSIIEEIEQKF-LAKYPSTEAK---SRFQLAKSFF 443

  Fly   426 YKYLQKILGPELVQKPQLKIGQLMKQRK----LTAALLACCLELALHVHHKLVEGLRFPFVLHCF 486
            :..|.:||..|:..||.:.:.:|:.|:.    ....|:|||:||.|..:.   ..|:||:||.||
  Fly   444 FYLLDQILQAEIRNKPDIDLKRLLVQKVSLVIFNITLMACCVELVLEAYK---TELKFPWVLDCF 505

  Fly   487 SLDAYDFQKILELVVRY--DHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQR---LPRY 546
            |:.|::||||:|:|||:  ..|.|.|.|||||:.:||.||:.|.:.::|.:|..:...   ||.:
  Fly   506 SISAFEFQKIIEIVVRHGSHEGCLNRSLIKHLNSIEETCLERLAWARNSTVWEMIASAQLPLPTW 570

  Fly   547 KEVDAETEDKENFSTGS-SICLRKFYGLANRRLLLLCKSLCLVDSFPQ-IWHLAEHSFTLESSRL 609
            ..|:.:.      :.|. .|.|||.|.|...|:..||..|.|.:..|: |||:.|||.|.| :.|
  Fly   571 LMVNLDR------AAGPLQIFLRKVYLLGWLRIQKLCSELSLCEKTPESIWHIFEHSITHE-TEL 628

  Fly   610 LRNRHLDQLLLCAIHLHVRLEKLH-LTFSMIIQHYRRQPHFRRSAYREVSL-----GNGQTADII 668
            :::|||||.::|||::::|::::. ..||.|::.||.||....|.||||.:     |..:..|||
  Fly   629 MKDRHLDQNIMCAIYIYIRVKRMEDPKFSDIMRAYRNQPQAVNSVYREVFIDINEDGEPKVKDII 693

  Fly   669 TFYNSVYVQSMGNYGRHLECAQTRKSLEESQSNVGILTETTSNELSMRA-NISISSPPPPRVCQS 732
            .|||..||..|                  .|..:..|..|.  ::|.|| ::.:|..|..|..|.
  Fly   694 HFYNHTYVPLM------------------RQFVIDYLNVTP--DVSGRASDLQLSPHPKERAAQP 738

  Fly   733 GSCS-SHPPSSPAASPLSLQSSPN----------VKRAASSNDLMREIKR 771
            ...: ||.......|...:|.|||          .|...:.|:.:|..||
  Fly   739 KKVTQSHSLFVSQMSKNEIQQSPNQMVYSFCRSPAKDLQAMNEKVRGGKR 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbf2NP_524372.1 DUF3452 83..210 CDD:288762 36/142 (25%)
RB_A 380..536 CDD:280101 56/161 (35%)
CYCLIN 564..679 CDD:294043 51/121 (42%)
RbfNP_525036.2 DUF3452 90..225 CDD:288762 37/143 (26%)
RB_A 376..560 CDD:280101 59/190 (31%)
RB_B 582..704 CDD:280100 51/122 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449369
Domainoid 1 1.000 76 1.000 Domainoid score I3152
eggNOG 1 0.900 - - E1_KOG1010
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 141 1.000 Inparanoid score I1784
Isobase 1 0.950 - 0 Normalized mean entropy S7132
OMA 1 1.010 - - QHG46367
OrthoDB 1 1.010 - - D113612at2759
OrthoFinder 1 1.000 - - FOG0002362
OrthoInspector 1 1.000 - - otm2953
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13742
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
1110.860

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