DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbf2 and rbl2

DIOPT Version :10

Sequence 1:NP_524372.1 Gene:Rbf2 / 41941 FlyBaseID:FBgn0038390 Length:783 Species:Drosophila melanogaster
Sequence 2:XP_002937369.2 Gene:rbl2 / 100490373 XenbaseID:XB-GENE-1012835 Length:1089 Species:Xenopus tropicalis


Alignment Length:1095 Identity:221/1095 - (20%)
Similarity:395/1095 - (36%) Gaps:379/1095 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EVEGE---AETLVR-RFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTSEADAQEWLCCAVYSE 65
            |.|||   ||..:| |:...|..|.::.|.:..|...|.|   ::...|.|.:|..||.|::|..
 Frog     6 EEEGEGKQAEEQLRCRYDELCSSLNMDERARGEAWEYYSR---ISQNYTLEGNALHWLACSLYVA 67

  Fly    66 LQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLTQNENTFQLEV 130
            . |..:..:.....|.|         .||||::|.|.::::.:|..:::.|..:......|:...
 Frog    68 C-RQTVPTVGRGTVEGN---------YVSLTQILSSSELSLIEFFNKIKKWEDMANLPTEFRTRT 122

  Fly   131 EELRCRLGITSTLLRHYKHIFRSLFVHPGKGADPGAANH-----------YQALYEFGWLLFLVI 184
            ::|.....:::.|.:.|..||:.:|..|   .:.....|           ...:|:|.|:||:..
 Frog   123 KKLERNFTVSAVLFKKYDPIFQEVFRSP---LEEQPRQHRGRKQRRQPCTVSEVYQFCWVLFIHT 184

  Fly   185 RNELPGFAITNLINGCQVLVCTMDLLFVNALEVP-RSVVIRREFSGVPKNWDTEDFN-PILLNKY 247
            :...|..: .:|:|...:|:|.:||::.|||:.| |..::...|.|:|:::.:.::. |  |...
 Frog   185 KGNFPMIS-DDLVNSYHLLLCALDLVYGNALQCPNRRELLNPNFQGLPEDFCSREYKAP--LEAP 246

  Fly   248 SVLEALGELIP--ELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIKEGMLDINLENLN 310
            .::|.|..|..  .|.|||:   |..|:...:..|:....|.|....:...:..|....:::.:|
 Frog   247 CIIETLCGLHDGLVLEAKGI---KEHFWKPYIRKLFDKKILKGKSDSLVGFLDPGNFADSVKAIN 308

  Fly   311 RKYTNQVADISEMDERVLL---------------------SVQGA-----IETKGDSPKSPQLAF 349
            :.|...|.....:||||.:                     ||:.|     ::...|..||.:::.
 Frog   309 KAYEGYVLSAGNLDERVFMEDVEEEIGRIGQCLNPSLGMESVERAKVTYNLQQNFDKFKSLRVST 373

  Fly   350 QTSSSPSHRKLSTHDLPASLPLS-----------IIKAFPKKEDADKIVNYL-----DQT----- 393
            ..:|....|:.|    |.:.|:|           |:..| |...:::::..|     |.|     
 Frog   374 PLTSLKYIRECS----PCTTPISSAMYCVSRLFTILTGF-KPAPSERLLQMLRSCSRDPTKTILR 433

  Fly   394 -LEEMNRTF-----TMAVKDFLDAELSGKRFRQARGLYYKYLQKILGPELVQKPQLKIGQLMKQR 452
             |:||:.||     ::|.|.|. .:::.|.||.|..||||.|:.::..|..:...:.:..:::|.
 Frog   434 RLKEMSETFCENTDSVAEKQFC-RDITKKYFRLAEVLYYKVLESVIDQEKKRLGDIDMSSILEQD 497

  Fly   453 KLTAALLACCLELALHVHHKLVEGLRFPFVLHCFSLDAYDFQKILELVVRYDHGFLGRELIKHLD 517
            ....:|::||||:.:..:..  .| .||.::..|.|..|.|.|::|:|::.:.| |.||::|||:
 Frog   498 VFHRSLMSCCLEITVFSYKP--PG-NFPSIIVMFELAPYQFYKVIEVVIKAEEG-LCREVVKHLN 558

  Fly   518 VVEEMCLDSLIFRKSSQLWWELNQ---RLPRYKEV------------------------------ 549
            .:||..|:.:.:...|.||.::.:   ::|..:||                              
 Frog   559 NIEEQILECMAWTHDSPLWDKIRENDGKIPLCEEVLHPQHFEKSGDNGTTGSLTPRRINEIRADA 623

  Fly   550 ----------------------------------DAETE-------------------------- 554
                                              |:.:|                          
 Frog   624 SGLGRSVPSSPATLCDRYSSPAAGTARRRLFVDPDSSSEAGSPAQASPLATDTVATPPVPGQTLV 688

  Fly   555 ----------------------------------------------------------------- 554
                                                                             
 Frog   689 TMATATVTANNGQTVTIPVQGIANENGGITFFPVQVNVSSQPHSVTSSVPPLTAQALAGPLNPQQ 753

  Fly   555 -----------------DKENFST----GSSICL--RKFYGLANRRLLLLCKSLCLVDSF-PQIW 595
                             .|:|.::    .||:.|  |:.|.||:.||..||..|.:.|.. .:||
 Frog   754 IQGQVSVSQVPASPGQQSKQNLTSKLKKASSLTLFCRRVYCLASIRLKDLCLKLDISDELRRKIW 818

  Fly   596 HLAEHSFTLESSRLLRNRHLDQLLLCAIHLHVRLEKLHLTFSMIIQHYRRQPHFRRSAYREVSL- 659
            ...|.|. :....|:::|||||||:||:::..::.|...:|..|::.||.|||.....||.|.| 
 Frog   819 TCFEFSL-VHCPELIKDRHLDQLLMCAVYVITKVTKEDTSFHNIMKCYRVQPHASSHVYRSVLLK 882

  Fly   660 -----------------------------------------------------------GNG--- 662
                                                                       |:.   
 Frog   883 KRRRRQSGSSDHILQPGSPAENTKDICSREPSPVMRSSSTLPVPQPNSAPPTPTRITAAGSNFVE 947

  Fly   663 -QTADIITFYNSVYVQSMGNYGRHLECAQTRKSLEESQSNVGILTETTSNELSMRANISISSPPP 726
             :..|::.|||::|::.:.::           ::..||||       ||....:....||.:..|
 Frog   948 EERGDLVQFYNNIYIEKIKSF-----------AMRFSQSN-------TSEATPLSPYPSIRAVSP 994

  Fly   727 PRV----CQSGSCSSHPPSSPAASPLS-----LQSSPNVKRAASSNDLMREIKRP 772
            .|:    ..|...|:|...:....|..     ...|| .||....|.::|..:.|
 Frog   995 RRIQLSHIHSIYVSTHNDDATTVCPREKICYYFDLSP-AKRLQEINSMIRTGETP 1048

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbf2NP_524372.1 DUF3452 83..213 CDD:463402 29/140 (21%)
RB_A <384..536 CDD:460364 48/167 (29%)
RB_B <593..679 CDD:460363 32/149 (21%)
rbl2XP_002937369.2 CYCLIN_SF 23..107 CDD:410207 23/96 (24%)
DUF3452 78..212 CDD:463402 31/146 (21%)
RB_A 389..580 CDD:460364 55/196 (28%)
SP1-4_N <606..>787 CDD:425404 6/180 (3%)
CYCLIN_RBL2 784..972 CDD:410309 44/199 (22%)

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