DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5516 and zcchc10

DIOPT Version :9

Sequence 1:NP_001189228.1 Gene:CG5516 / 41940 FlyBaseID:FBgn0038389 Length:176 Species:Drosophila melanogaster
Sequence 2:NP_001072634.1 Gene:zcchc10 / 780090 XenbaseID:XB-GENE-952785 Length:178 Species:Xenopus tropicalis


Alignment Length:169 Identity:74/169 - (43%)
Similarity:96/169 - (56%) Gaps:7/169 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYVHRSSRTKQLSKRMSQKEADAPKN 73
            |.:|:::..|.:     ..:||||||.:|||||||..||||::|.:||.:|.:.:.:|||.....
 Frog     7 RLIARRQAEANK-----QNVRCQKCLDMGHWSYECTGKRKYLYRPTRTAELKRALKEKEACLLLG 66

  Fly    74 QVEEHSEVASSEGKKVRRKRKTSKSSSSSSSSSDSSDSSSESGSSSESDSSSSSSDSDDEEGSSS 138
            |...:| ||.::.||.|.:..||.|.|||.|||.|||:.|.|.|...|.|||||.|||....|||
 Frog    67 QTSGNS-VAETKMKKKRSRSVTSSSGSSSGSSSSSSDTDSSSDSEDTSSSSSSSEDSDKSTSSSS 130

  Fly   139 DSSGSGSDSDSSE-DQKQGAPQKKKKRAGSSPESSDDQE 176
            .|..|.|.|.||| |....|.......:.||.|.|..::
 Frog   131 TSLSSQSSSSSSECDSDTSASSTSASSSTSSEEDSSSED 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5516NP_001189228.1 zf-CCHC_3 27..59 CDD:290628 20/31 (65%)
zcchc10NP_001072634.1 zf-CCHC_3 17..53 CDD:316439 20/40 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10747
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 124 1.000 Inparanoid score I4569
OMA 1 1.010 - - QHG54889
OrthoDB 1 1.010 - - D1638633at2759
OrthoFinder 1 1.000 - - FOG0006615
OrthoInspector 1 1.000 - - oto105482
Panther 1 1.100 - - LDO PTHR13491
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5402
SonicParanoid 1 1.000 - - X5618
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.200

Return to query results.
Submit another query.