DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxl7 and SKIP2

DIOPT Version :9

Sequence 1:NP_650512.1 Gene:Fbxl7 / 41935 FlyBaseID:FBgn0038385 Length:772 Species:Drosophila melanogaster
Sequence 2:NP_569047.1 Gene:SKIP2 / 836860 AraportID:AT5G67250 Length:527 Species:Arabidopsis thaliana


Alignment Length:471 Identity:109/471 - (23%)
Similarity:173/471 - (36%) Gaps:158/471 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 PRRGASSNG------------LGGGAASAIGPPPWNRKGPFRCGPLFDR-----LPDEAVVRIFS 414
            |...|.|||            :.||.:.|:             |.:.||     ||||.:..:|.
plant     5 PSSTAESNGRELDLRLWSPVIVAGGESMAV-------------GNVVDRDFTGDLPDECLAHVFQ 56

  Fly   415 WLDSCELCNVARVCRRFEHLAWRPILWKVISLRGEH---LNG---------------DKTLKMIF 461
            :|.:.:....:.||:|          |.::..:..|   |:.               |...|:..
plant    57 FLGAGDRKRCSLVCKR----------WLLVDGQSRHRLSLDAKDEISSFLTSMFNRFDSVTKLAL 111

  Fly   462 RQLCGQSCNGACPEVERVMLADGCRISDKGLQLLTRRCPELTHLQLQTCVDITNQALVEALTKCS 526
            |  |.:.               ...:||:.|.:::.||..||.::|:.|.:||:..:.:....|.
plant   112 R--CDRK---------------SVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNCK 159

  Fly   527 NLQHLDVTGC-------------------------------------------SQVSSIS----P 544
            ||:.|.|..|                                           |.:.||.    .
plant   160 NLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDDASSSSLRSICLKELV 224

  Fly   545 NPHMEPPRRLL-----LQYLDLTDCMAIDDMGLKIVVKNCPQLVYLYLRRCIQVTDAGLKFVPSF 604
            |..:..|  ||     |:.|.:..|:...|..|:::......|..::|.| :||:|.||..: |.
plant   225 NGQVFEP--LLATTRTLKTLKIIRCLGDWDKVLQMIANGKSSLSEIHLER-LQVSDIGLSAI-SK 285

  Fly   605 CVSLKELSVSDCLNITDFGLYELAKLGAALRYLSVA--KCERVSDAGLKVIARRCYKLRYL---- 663
            |.:::.|.:......::|||..:|:....||.|.:.  :..|:.|.||..:|:.|..|:.|    
plant   286 CSNVETLHIVKTPECSNFGLIYVAERCKLLRKLHIDGWRTNRIGDEGLLSVAKHCLNLQELVLIG 350

  Fly   664 ----------NARGCE-----------AVSDDSITVLARSCPRLRALDIGKCDVSDAGLRALAES 707
                      .|..||           .:.|..|..:||.|..||...|..|.|||.|:.|||..
plant   351 VNATHMSLAAIASNCEKLERLALCGSGTIGDTEIACIARKCGALRKFCIKGCPVSDRGIEALAVG 415

  Fly   708 CPNLKKLSLRSCDMIT 723
            ||||.||.::.|.::|
plant   416 CPNLVKLKVKKCKVVT 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxl7NP_650512.1 F-box-like 401..447 CDD:289689 12/50 (24%)
leucine-rich repeat 441..460 CDD:275381 5/36 (14%)
AMN1 <451..595 CDD:187754 39/210 (19%)
leucine-rich repeat 476..501 CDD:275381 5/24 (21%)
leucine-rich repeat 502..521 CDD:275381 6/18 (33%)
leucine-rich repeat 528..555 CDD:275381 9/73 (12%)
leucine-rich repeat 556..581 CDD:275381 5/24 (21%)
AMN1 577..746 CDD:187754 53/174 (30%)
leucine-rich repeat 582..607 CDD:275381 10/24 (42%)
leucine-rich repeat 608..633 CDD:275381 5/24 (21%)
leucine-rich repeat 634..659 CDD:275381 9/26 (35%)
leucine-rich repeat 660..685 CDD:275381 10/49 (20%)
leucine-rich repeat 686..710 CDD:275381 12/23 (52%)
leucine-rich repeat 711..735 CDD:275381 5/13 (38%)
leucine-rich repeat 737..761 CDD:275381
SKIP2NP_569047.1 F-box-like 45..>73 CDD:403981 9/37 (24%)
AMN1 82..295 CDD:187754 46/233 (20%)
leucine-rich repeat 106..128 CDD:275381 6/38 (16%)
leucine-rich repeat 135..160 CDD:275381 7/24 (29%)
leucine-rich repeat 161..185 CDD:275381 4/23 (17%)
leucine-rich repeat 239..264 CDD:275381 5/24 (21%)
leucine-rich repeat 265..288 CDD:275381 10/24 (42%)
leucine-rich repeat 289..314 CDD:275381 5/24 (21%)
AMN1 <311..>416 CDD:187754 30/104 (29%)
leucine-rich repeat 315..342 CDD:275381 9/26 (35%)
leucine-rich repeat 343..367 CDD:275381 4/23 (17%)
leucine-rich repeat 368..393 CDD:275381 5/24 (21%)
leucine-rich repeat 394..418 CDD:275381 12/23 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13318
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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