DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fbxl7 and skpt-1

DIOPT Version :10

Sequence 1:NP_650512.1 Gene:Fbxl7 / 41935 FlyBaseID:FBgn0038385 Length:772 Species:Drosophila melanogaster
Sequence 2:NP_741137.1 Gene:skpt-1 / 175749 WormBaseID:WBGene00018613 Length:421 Species:Caenorhabditis elegans


Alignment Length:324 Identity:80/324 - (24%)
Similarity:133/324 - (41%) Gaps:41/324 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   404 LPDEAVVRIFSWLDSCELCNVARVCRRFEHLAWRPILWKVISLRGEHLNGDKTLKMIFRQLCGQS 468
            :|||...:|||.|...:|.:...||.||..:..:...|.:...:...::....:.:..|::....
 Worm    93 IPDEITEQIFSNLKKKDLLSAMLVCHRFYGIGHKSRNWIITDAQDRPISEISLIALSQRKIKVLR 157

  Fly   469 CNGACPEVERVMLADG-----CRISDKGLQLLTRRCPELTHLQLQTCVDITNQALVEALTKCSNL 528
            ..||  :.:|::.||.     ..:|...|:||......||..|:|.           .|..|..|
 Worm   158 LAGA--KADRILRADERLVEVALLSTSRLELLDLSRTNLTARQMQI-----------MLKPCQKL 209

  Fly   529 QHLDVTGCSQVSS-----ISPNPHMEPPRRLLLQYLDLTDCMAIDDMGLKIVVKNCPQLVYLYLR 588
            :.|.:.| :|:..     |:.|..        |:.||::....|...|..::.:||..|..|.|.
 Worm   210 KCLSIEG-NQLDDHVAICIAENRG--------LRELDISMTNGITANGASLIFRNCKDLQQLNLA 265

  Fly   589 RCIQVTDAGLKFVPSFCVSLKELSVSDCLNITDFGL--YELAKLGAALRY---LSVAKCERVSDA 648
            .|..........:.|....||:|::|.  .:.:||:  ..:..|.|...|   |.::....:||.
 Worm   266 WCGLTQPIVTVIIHSIGEKLKKLNLSG--TVRNFGINNKHIEILAAKSNYVTDLDLSDNVEISDP 328

  Fly   649 GLKVIARRCYKLRYLNARGCEAVSDDSITVLARSCPRLRALDIGKCDVSDAGLRALAESCPNLK 712
            ||.||..:..:|..::...|..: |.::.|...|.|.|..|::..| |||..:....|.|.|||
 Worm   329 GLAVILNKFPRLTTISLNRCYGL-DPNMVVHFNSKPSLVYLNVHGC-VSDTNMELFLEMCSNLK 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxl7NP_650512.1 leucine-rich repeat 502..521 CDD:275381 4/18 (22%)
leucine-rich repeat 528..555 CDD:275381 6/31 (19%)
leucine-rich repeat 556..581 CDD:275381 7/24 (29%)
AMN1 577..746 CDD:187754 40/141 (28%)
leucine-rich repeat 582..607 CDD:275381 5/24 (21%)
leucine-rich repeat 608..633 CDD:275381 7/26 (27%)
leucine-rich repeat 634..659 CDD:275381 8/27 (30%)
leucine-rich repeat 660..685 CDD:275381 5/24 (21%)
leucine-rich repeat 686..710 CDD:275381 8/23 (35%)
leucine-rich repeat 711..735 CDD:275381 2/2 (100%)
leucine-rich repeat 737..761 CDD:275381
dermokine <279..>394 CDD:455732
F-box_SF 401..444 CDD:459239 13/39 (33%)
leucine-rich repeat 441..460 CDD:275381 1/18 (6%)
leucine-rich repeat 476..501 CDD:275381 7/29 (24%)
LRR <483..>640 CDD:443914 39/171 (23%)
skpt-1NP_741137.1 F-box-like 92..130 CDD:463757 12/36 (33%)
leucine-rich repeat 153..183 CDD:275381 6/31 (19%)
RNA1 <171..347 CDD:444072 45/197 (23%)
leucine-rich repeat 184..208 CDD:275381 9/34 (26%)
leucine-rich repeat 209..232 CDD:275381 6/23 (26%)
leucine-rich repeat 233..258 CDD:275381 7/24 (29%)
leucine-rich repeat 259..284 CDD:275381 5/24 (21%)
leucine-rich repeat 285..313 CDD:275381 8/29 (28%)
leucine-rich repeat 314..339 CDD:275381 7/24 (29%)
leucine-rich repeat 340..362 CDD:275381 4/22 (18%)
leucine-rich repeat 365..388 CDD:275381 8/23 (35%)
Blue background indicates that the domain is not in the aligned region.

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