DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fbxl7 and Skp2

DIOPT Version :10

Sequence 1:NP_650512.1 Gene:Fbxl7 / 41935 FlyBaseID:FBgn0038385 Length:772 Species:Drosophila melanogaster
Sequence 2:XP_309088.4 Gene:Skp2 / 1270388 VectorBaseID:AGAMI1_010502 Length:392 Species:Anopheles gambiae


Alignment Length:330 Identity:88/330 - (26%)
Similarity:139/330 - (42%) Gaps:53/330 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   391 RKGPFRCGPLFDRLPDEAVVRIFSWLDSCELCNVARVCRRFEHLAWRPILWKVISLRGEHLNGDK 455
            ||..:....||..|.||.::.|..||....|.:..:|.|||..::....||..:.|....|..|.
Mosquito    60 RKATYGEEDLFSLLSDEVLLHILKWLPKKTLLSCGQVNRRFNRVSKDETLWYRLDLSNRTLQFDG 124

  Fly   456 TLKMIFR-----QLCGQSCNG-----------ACPEVERVMLADGCRISDKGLQLLTRRCPELTH 504
            .::::.|     :|...|...           ||.:|:.:.|: .|.:|...|..|...|..|..
Mosquito   125 LVEVLSRGVIVLRLAQTSIVNPTPDSNYLEFPACIKVQYLDLS-MCTVSVAVLGALLANCRALVK 188

  Fly   505 LQLQT-------CVDITNQALVEA--LTKCSNLQHLDVTGCSQVSSISPNPHMEPPRRLLLQYLD 560
            |.|:.       |.:|.....:||  ||.||.   :|.||...::......|     .|.:.:..
Mosquito   189 LSLENVPLDGRICAEIAENRKLEALNLTMCSG---IDATGMRLMAKALTRLH-----SLNVSWTS 245

  Fly   561 LTDCMAIDDMGLKIVVKN-CPQLVYLYLRRC-IQVTDAGLKFVPSFCVSLKELSVSDCLNITDFG 623
            |: ..|:.::     |:| .||:|:|.|..| ..:||..:..:...|..|..|.:|||..:|:..
Mosquito   246 LS-AEAVQEL-----VRNLTPQIVHLNLSGCRSTLTDEKVAVLIKRCTKLVALDLSDCTPLTEVV 304

  Fly   624 LYELAKLGAALRYLSVAKCERVS-DAGLKVIARRCYKLRYLNARGCEAVSDDSITVLARSCPRLR 687
            :..|.| ...:.|||:::|..:. .|.|.:...:  .||:|:..|  .|||.:|..|..|     
Mosquito   305 IKTLCK-ARKIEYLSLSRCYNIPVTAYLNLTELK--TLRFLDLFG--LVSDQAIATLKNS----- 359

  Fly   688 ALDIG 692
            .:|||
Mosquito   360 LVDIG 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fbxl7NP_650512.1 leucine-rich repeat 502..521 CDD:275381 5/25 (20%)
leucine-rich repeat 528..555 CDD:275381 4/26 (15%)
leucine-rich repeat 556..581 CDD:275381 4/25 (16%)
AMN1 577..746 CDD:187754 37/119 (31%)
leucine-rich repeat 582..607 CDD:275381 7/25 (28%)
leucine-rich repeat 608..633 CDD:275381 8/24 (33%)
leucine-rich repeat 634..659 CDD:275381 6/25 (24%)
leucine-rich repeat 660..685 CDD:275381 10/24 (42%)
leucine-rich repeat 686..710 CDD:275381 3/7 (43%)
leucine-rich repeat 711..735 CDD:275381
leucine-rich repeat 737..761 CDD:275381
dermokine <279..>394 CDD:455732 2/2 (100%)
F-box_SF 401..444 CDD:459239 14/42 (33%)
leucine-rich repeat 441..460 CDD:275381 4/18 (22%)
leucine-rich repeat 476..501 CDD:275381 7/24 (29%)
LRR <483..>640 CDD:443914 45/167 (27%)
Skp2XP_309088.4 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.