DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment glob1 and si:ch211-5k11.8

DIOPT Version :10

Sequence 1:NP_524369.1 Gene:glob1 / 41930 FlyBaseID:FBgn0027657 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001028265.1 Gene:si:ch211-5k11.8 / 497162 ZFINID:ZDB-GENE-131121-640 Length:143 Species:Danio rerio


Alignment Length:123 Identity:26/123 - (21%)
Similarity:47/123 - (38%) Gaps:11/123 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNSDEVQLIKKTWEIPVATPTDSGAAILTQFFNRFPSNLEKFPFRDVPLEELS-GNARFRAHAGR 64
            ::..:..::|..|........:.||..|.:....:|.....|..    ..:|| |:...:.|...
Zfish     3 LSDKDKAVVKAIWAKISPKADEIGAEALARMLTVYPQTKTYFSH----WSDLSPGSGPVKKHGKT 63

  Fly    65 IIRVFDESIQVLGQ-DGDLEKLDEIWT-KIAVSHIPRTVSKESYNQLKGVILDVLTAA 120
            |:....|:|..:.. .|.|..|.|:.. |:.|.  |......|:|.:  |::.:|..|
Zfish    64 IMGAVGEAISKIDDLVGGLAALSELHAFKLRVD--PANFKILSHNVI--VVIAMLFPA 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glob1NP_524369.1 Mb-like 9..142 CDD:381254 26/115 (23%)
si:ch211-5k11.8NP_001028265.1 Hb-alpha-like 3..143 CDD:381263 26/123 (21%)

Return to query results.
Submit another query.