DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment glob1 and glb-28

DIOPT Version :9

Sequence 1:NP_001287343.1 Gene:glob1 / 41930 FlyBaseID:FBgn0027657 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_510537.1 Gene:glb-28 / 189438 WormBaseID:WBGene00012441 Length:217 Species:Caenorhabditis elegans


Alignment Length:106 Identity:26/106 - (24%)
Similarity:35/106 - (33%) Gaps:40/106 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNSDEVQLIKKTW-EIPVATPTDSGAAILTQFF----------------NRF-----------PS 37
            ::.:..:|||::| .||.|   ..|.|.|..|.                ||.           ..
 Worm    57 ISPEHQKLIKRSWNRIPKA---QFGRASLEAFITAAQVTHAIFVDKETENRHVKYFVDLVQSCVD 118

  Fly    38 NLEKFPFRDVPLEELSGNARFRAHA-----GRIIRVFDESI 73
            |||.......|..:|.|    |.||     |:....|.||:
 Worm   119 NLENLETGVKPWLDLIG----RGHANFKITGKHWEKFGESL 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glob1NP_001287343.1 Mb_like 9..142 CDD:271266 25/98 (26%)
glb-28NP_510537.1 Mb-like 65..187 CDD:381254 25/98 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3378
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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