DRSC/TRiP Functional Genomics Resources

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Protein Alignment glob1 and glb-8

DIOPT Version :9

Sequence 1:NP_001287343.1 Gene:glob1 / 41930 FlyBaseID:FBgn0027657 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001129755.1 Gene:glb-8 / 182935 WormBaseID:WBGene00007741 Length:402 Species:Caenorhabditis elegans


Alignment Length:152 Identity:31/152 - (20%)
Similarity:63/152 - (41%) Gaps:31/152 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EVQLIKKTWEIPVAT--PTDSGAAILTQFFNR--FPSNLEKFPFRDVPLEELSGNAR--FRAHAG 63
            ::.|::..|.....|  ||..||:|    ::|  |.:.:.|...:.|.|.....|..  .:||..
 Worm   231 QIHLVRALWRQVYTTKGPTVIGASI----YHRLCFKNVMVKEQMKQVELPPKFQNRDNFIKAHCK 291

  Fly    64 RIIRVFDESIQVLGQ----DGDLEKLDEIWTKIAVSHIPRTVSKESYNQLKGVILDVLTAACSLD 124
            .:..:.|:.::.|..    .|:|.::..:..|:    :...::.:.:|.:...|:|     |:|:
 Worm   292 AVAELIDQVVENLDHLDNVTGELMRIGRVHAKV----LRGELTGKLWNTVAETIID-----CTLE 347

  Fly   125 --------ESQAATWAKLVDHV 138
                    |:....||.:|..|
 Worm   348 WGDRRCRSETVRKAWALIVAFV 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glob1NP_001287343.1 Mb_like 9..142 CDD:271266 30/148 (20%)
glb-8NP_001129755.1 Mb-like 235..373 CDD:381254 30/148 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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