DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmt-1 and ABCB24

DIOPT Version :9

Sequence 1:NP_650503.1 Gene:Hmt-1 / 41925 FlyBaseID:FBgn0038376 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_194591.1 Gene:ABCB24 / 828980 AraportID:AT4G28620 Length:680 Species:Arabidopsis thaliana


Alignment Length:622 Identity:269/622 - (43%)
Similarity:379/622 - (60%) Gaps:24/622 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 PHQRLDNDTANESQGNVQTGSAFRNGWRKLRTVFPYLWPKKNIALQIAVIVCIILLLAGRVIKLF 267
            ||....|.|::|   |:            ||.:..|||.|.|..|...||.....|:..:.:.:.
plant    75 PHPEKINRTSSE---NI------------LRMISSYLWMKDNPKLCFRVISAFACLVGAKFLNVQ 124

  Fly   268 LPIYRKKLVDSLTIAPIVFRWDFVLIYVAL--SFLQGGGTGSMG--LFNNLRTFLWIRVQQYTTR 328
            :|...|..:|.|:.:..|....:::...|.  |.|.|.|....|  .||.|||.::.:|...|.|
plant   125 VPFLFKVAIDWLSSSSFVDSNPYLVAAFATPSSVLIGYGIARSGSSAFNELRTSVFSKVALRTIR 189

  Fly   329 EIEIELFRHLHQLSLRWHLQRKTGEVLRVMDRGTDSINNLLNYIVFSIAPTILDLLVAVAYFVYA 393
            .|..::...||.|.||:||.|.||.:.|::|||:.:||.:|:.:||:|.||||::.:......|.
plant   190 TISRKVLSRLHDLDLRYHLNRDTGALNRIIDRGSRAINTILSAMVFNIMPTILEISMVSCILAYK 254

  Fly   394 FNWWFGLIVFLTMFLYIASTIAITEWRTKYQRRMNLADNEQRARSVDSLLNFETVKYYGAEHYEV 458
            |...:.||..|::..|||.|:|:|:||.|.::.||.|:|:...|::|||:|:|||||:..|.||.
plant   255 FGAVYALITCLSVGSYIAFTLAMTQWRIKIRKAMNEAENDASTRAIDSLINYETVKYFNNEDYEA 319

  Fly   459 DCYREAILKYQKEEFLSMLTLNMLNTAQNIILCLGLLAGSLLCVYLVVHHQTLTVGDFVLFSTYL 523
            ..|.:....|:.....|..:..:||..|:.|....|....:||...:::.| :||||.|:.:..|
plant   320 RKYDQLHENYEDAALQSRKSFALLNFGQSFIFSTALSTAMVLCSQGIMNGQ-MTVGDLVMVNGLL 383

  Fly   524 MELYMPLNWFGTYYRAIQKNFVDMENMFDLLKEEEEIVDAP---GCSPLLTAGGGIEFSNVTFGY 585
            .:|.:||.:.|..|....:..|||::||..|:|..:|.|..   ...||:..||.|.|.||.|.|
plant   384 FQLSLPLYFLGVVYSDTVQGLVDMKSMFKFLEERSDIGDKDIDRKLPPLVLKGGSISFENVHFSY 448

  Fly   586 SPEKIVLRNVSFTVPAGKTVAIVGPSGAGKSTIMRLLFRFYDVQTGAILIDGQNIKLVQQQSLRK 650
            .||:.:|..:||.|||||:|||||.||:|||||:|::|||:||.:|.:.||||:||.|:.:|||.
plant   449 LPERKILDGISFEVPAGKSVAIVGSSGSGKSTILRMIFRFFDVDSGNVKIDGQDIKEVRLESLRS 513

  Fly   651 AIGVVPQDTVLFNNTIFYNIEYAKLGASDEAVYEAARAADIHERILGFPEKYETKVGERGLRLSG 715
            :||||||||||||:|||:||.|..|.|::|.||.|||.|.||:.|:.||:||.|.||||||.|||
plant   514 SIGVVPQDTVLFNDTIFHNIHYGNLSATEEEVYNAARRAAIHDTIMKFPDKYSTAVGERGLMLSG 578

  Fly   716 GEKQRVAIARTLLKAPIIVLLDEATSALDTHTERNIQAALARVCANRTTIIVAHRLSTIIHADEI 780
            |||||||:||..||:|.|:|.||||||||:.||..|...|..:.:|||.|.:||||:|.:..|||
plant   579 GEKQRVALARAFLKSPAILLCDEATSALDSKTEAEIMKTLRSLASNRTCIFIAHRLTTAMQCDEI 643

  Fly   781 LVLQQGSIAERGRHEELVLREDGIYADMWQQQLKNLD 817
            ||:::|.:.|:|.| |::|.:.|.||.:|.||...|:
plant   644 LVMEKGKVVEKGTH-EVLLGKSGRYAKLWTQQNSKLE 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmt-1NP_650503.1 MTABC_N 3..241 CDD:292803 10/37 (27%)
ABC_membrane 255..530 CDD:279056 94/278 (34%)
ATM1 314..811 CDD:227590 236/499 (47%)
ABCC_ATM1_transporter 576..812 CDD:213220 139/235 (59%)
ABCB24NP_194591.1 ABC_membrane 112..390 CDD:294371 94/278 (34%)
ATM1 175..673 CDD:227590 236/499 (47%)
ABCC_ATM1_transporter 439..674 CDD:213220 139/235 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 206 1.000 Domainoid score I823
eggNOG 1 0.900 - - E1_COG5265
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D248727at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.