DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmt-1 and ABCB2

DIOPT Version :10

Sequence 1:NP_650503.1 Gene:Hmt-1 / 41925 FlyBaseID:FBgn0038376 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_194326.2 Gene:ABCB2 / 828702 AraportID:AT4G25960 Length:1273 Species:Arabidopsis thaliana


Alignment Length:629 Identity:197/629 - (31%)
Similarity:298/629 - (47%) Gaps:134/629 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 AFRNGWRKLRTVFPYLWPKKNIALQIAVIVCIILLLAGRVIKLFLPIYRKKLVDSLTIAPIVFRW 288
            ::.:||.:         .:|.|. :||::.|     ...||.|.  :|        ||..|.|  
plant   737 SYYSGWDE---------TQKEIK-KIAILFC-----CASVITLI--VY--------TIEHICF-- 774

  Fly   289 DFVLIYVALSFLQGGGTGSMGLFNNLRTFLWIRVQQYTTREIEIELFRHLHQLSLRWHLQRKTGE 353
                             |:||      ..|.:||::        .:||.:.:..:.|.  .:...
plant   775 -----------------GTMG------ERLTLRVRE--------NMFRAILKNEIGWF--DEVDN 806

  Fly   354 VLRVMDRGTDSINNLLNYIVFSIAPTIL-DLLVAVAYFVYAF--NWWFGLIVFLTMFLYIASTIA 415
            ...::....:|...||..||...:..:| :|.:.|..|:.||  ||...|:|..|..|.|:..|:
plant   807 TSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHIS 871

  Fly   416 ITEWRTKYQRRMNLADNEQRARSVDSLLNFETVKYYGAEHYEVDCYREAILKYQKEEFLSMLTLN 480
            ...:...|...:|.|..:....:.:|:.|..||..:.||...::.|...:|:..|..|..     
plant   872 EKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRR----- 931

  Fly   481 MLNTAQNIILCLGLLAGSLLCVYLVVHHQTLTVGDFVLFSTYLMELYMPLNWFGTY--------Y 537
                        |.:||..           ..|..|.:||:|.:.|     |:|:.        :
plant   932 ------------GQIAGLF-----------YGVSQFFIFSSYGLAL-----WYGSTLMDKGLAGF 968

  Fly   538 RAIQKNFVDM------------------------ENMFDLLKEEEEIVDAPGCSPLLTAGGGIEF 578
            :::.|.|:.:                        .::|::|..:.:||.... ..|....|.||.
plant   969 KSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGETS-EELNNVEGTIEL 1032

  Fly   579 SNVTFGY--SPEKIVLRNVSFTVPAGKTVAIVGPSGAGKSTIMRLLFRFYDVQTGAILIDGQNIK 641
            ..|.|.|  .|:.::.|:....|.|||::|:||.||:|||:::.|:.||||...|.::|:|::||
plant  1033 KGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIK 1097

  Fly   642 LVQQQSLRKAIGVVPQDTVLFNNTIFYNIEYAKLGASDEAVYEAARAADIHERILGFPEKYETKV 706
            .:..::|||.||:|.|:..||..||:.||.|...|||...|.|:|..|:.|..|...||.|.|||
plant  1098 KLDLKALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKV 1162

  Fly   707 GERGLRLSGGEKQRVAIARTLLKAPIIVLLDEATSALDTHTERNIQAALARVCANRTTIIVAHRL 771
            ||||:::|||::||:||||.:||.|.|:||||||||||..:||.:|.||.|:.|||||::|||||
plant  1163 GERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRL 1227

  Fly   772 STIIHADEILVLQQGSIAERGRHEELVLREDGIY---ADMWQQQ 812
            |||.:||.|.||..|.|.|:|.|.:|||.:.|.|   ..:.|||
plant  1228 STIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQQQQ 1271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmt-1NP_650503.1 MTABC_N 3..241 CDD:465049 2/16 (13%)
ATM1 222..821 CDD:444078 197/629 (31%)
ABCB2NP_194326.2 MdlB 55..643 CDD:440747
MdlB 689..1272 CDD:440747 197/629 (31%)
Blue background indicates that the domain is not in the aligned region.

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