DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmt-1 and CG3156

DIOPT Version :9

Sequence 1:NP_650503.1 Gene:Hmt-1 / 41925 FlyBaseID:FBgn0038376 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_569844.2 Gene:CG3156 / 30994 FlyBaseID:FBgn0023536 Length:692 Species:Drosophila melanogaster


Alignment Length:608 Identity:181/608 - (29%)
Similarity:287/608 - (47%) Gaps:71/608 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 AVIVCIIL---------LLAGRVIKLFLPIYRKKLVDSLTIAPIVFRWDFVLIYVALSFLQGGGT 305
            |.|.|:::         |..|:||.:   ::.|..:||..:|.:   .::.::...: |:.|   
  Fly   125 AGIGCLVVSSAITMSVPLFLGKVIDV---VFNKSGMDSAAMAKL---GEYSVLLFGI-FVLG--- 179

  Fly   306 GSMGLFNNLRTFLWIRVQQYTTREIEIELFRHLHQLSLRWHLQRKTGEVLRVMDRGTDSINNLLN 370
               |..|..|..|:........|.:...|:|.:....:.|...:.|||::..:...|..:..   
  Fly   180 ---GFANFARVHLFGNAALRIVRSLRSRLYRSMLMQEVGWFDTKGTGELINRLSNDTLMVGT--- 238

  Fly   371 YIVFSIAPTILDLLVAVAYFVYAFNWWFGLIVFLTMFLYIASTIAITEWR------TKYQRRMNL 429
                |::..:.|.|.:||.....    .|::::.:..|...|.:.:....      .:|.||:..
  Fly   239 ----SLSQNVSDGLRSVAMIGVG----TGMMIYTSPQLAAVSALVVPAMAGMAIVYGRYVRRITK 295

  Fly   430 ADNEQRAR----SVDSLLNFETVKYYGAEHYEVDCY----REAILKYQKEEFLSMLTLNMLNTAQ 486
            .:.::.|.    :.:...|.:|||.:..|..||..:    .||:....||.....:...:.....
  Fly   296 VELDKYAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRARAIFFGLTGFCG 360

  Fly   487 NIILCLGLLAGSLLCVYLVVHHQTLTVGDFVLFSTYLMELYMPLNWFGTYYRAIQKNFVDMENMF 551
            |.|:...|..|..|     |...:||:|....|..|...:.:.:|....:|..:.|.....|.::
  Fly   361 NFIIISVLYYGGTL-----VLQDSLTIGALTAFMLYAGYVAISMNGLSNFYSQLNKGIGASERIW 420

  Fly   552 DLLKEEEEIVDAPGCSPLLTAGGGIEFSNV--TFGYSPEKIVLRNVSFTVPAGKTVAIVGPSGAG 614
            ::|..|..|....|..||....|.:.|.||  ||...||..||.:.|..:..|.|.|:||.||:|
  Fly   421 EILDRECSIPIDKGVVPLEKPVGEVGFQNVFFTFPTRPESAVLTDFSLNLMPGTTTAVVGRSGSG 485

  Fly   615 KSTIMRLLFRFYDVQTGAILIDGQNIKLVQQQSLRKAIGVVPQDTVLFNNTIFYNIEYAKLGA-- 677
            |:||..|:.|.||.|.|.:.:||.:::.|..|.||..||.|.|:.|||:.:|..||.|   ||  
  Fly   486 KTTIALLMLRLYDPQGGTVHLDGIDLRTVNPQWLRNNIGAVSQEPVLFSCSIRENILY---GANP 547

  Fly   678 ----SDEAVYEAARAADIHERILGFPEKYETKVGERGLRLSGGEKQRVAIARTLLKAPIIVLLDE 738
                |.|.:.:....|::.:.....|:..:|.||:||:.||||:||||||||.|:|.|.|::|||
  Fly   548 GETPSPERLQQVIEDANVSQFTDQLPDGLDTLVGQRGMMLSGGQKQRVAIARALIKNPAILILDE 612

  Fly   739 ATSALDTHTERNIQAALARVCANRTTIIVAHRLSTIIHADEILVLQQGSIAERGRHEELVLREDG 803
            ||||||..:|..:|.||..:...||.:.:|||||||.:||:|.||..|.|.|:|.:.||:..::|
  Fly   613 ATSALDAVSENLVQNALDNLIQGRTVLTIAHRLSTIRNADQIAVLSDGKIVEQGSYNELMGIQEG 677

  Fly   804 IYADMWQQQLKNLDAEQSGGSDN 826
            ::        :.|.|.|:.||.|
  Fly   678 VF--------RELVASQAFGSRN 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmt-1NP_650503.1 MTABC_N 3..241 CDD:292803
ABC_membrane 255..530 CDD:279056 56/297 (19%)
ATM1 314..811 CDD:227590 160/518 (31%)
ABCC_ATM1_transporter 576..812 CDD:213220 105/243 (43%)
CG3156NP_569844.2 MdlB 106..687 CDD:224055 177/601 (29%)
ABC_membrane 127..395 CDD:279056 58/296 (20%)
ABC_MTABC3_MDL1_MDL2 447..686 CDD:213216 107/249 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45458103
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24221
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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