DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmt-1 and atm1

DIOPT Version :9

Sequence 1:NP_650503.1 Gene:Hmt-1 / 41925 FlyBaseID:FBgn0038376 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_594288.2 Gene:atm1 / 2542779 PomBaseID:SPAC15A10.01 Length:693 Species:Schizosaccharomyces pombe


Alignment Length:652 Identity:247/652 - (37%)
Similarity:369/652 - (56%) Gaps:57/652 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 PYNPHQRLDNDTANESQGNVQTGSAFRNGWRKLRTVFPYLWPKKNIALQIAVIVCIILLLAGRVI 264
            |.|...:|.:|..::.  || ||...      ::.:..|:|||....|::.|:..:.||:|.:::
pombe    77 PLNTSVKLASDVPDDK--NV-TGQMI------VKDMLQYIWPKGKTNLKVRVVSALALLVAAKIL 132

  Fly   265 KLFLPIYRKKLVDSL-------------TIAPIVFRWDFVLIYVALSFLQGGGTGSMGLFNNLRT 316
            .:.:|.|.|.::|::             |:..:|..:.|..|:..             :|..||.
pombe   133 NVQVPFYFKSIIDTMNTTLVQEVGALWSTVGAVVLGYGFARIFST-------------VFQELRN 184

  Fly   317 FLWIRVQQYTTREIEIELFRHLHQLSLRWHLQRKTGEVLRVMDRGTDSINNLLNYIVFSIAPTIL 381
            .::..|.|...|.:...:::||..|.:.:||.::||.:.|.|||||..|:.:|:.:|..|.|..|
pombe   185 SVFAIVSQSAIRSVSSNVYQHLLNLDMNFHLSKQTGSITRAMDRGTKGISFILSSMVLHIIPITL 249

  Fly   382 DLLVAVAYFVYAFNWWFGLIVFLTMFLYIASTIAITEWRTKYQRRMNLADNEQRARSVDSLLNFE 446
            ::.:......|.:...|..|...|:.||...|:..|.|||.::|:.|.||::..|.:::||:|:|
pombe   250 EIAMVSGILTYKYGPSFSAIAATTVALYALFTVRTTSWRTVFRRQANAADSKASAAAIESLINYE 314

  Fly   447 TVKYYGAEHYEVDCYREAILKYQKEEFLSMLTLNMLNTAQNIILCLGLLAGSLLCVYL---VVHH 508
            .||.:..|.||:..|.:.:..|:|.......:|..||:.|.||....|    .|.:|:   .:..
pombe   315 AVKTFNNESYEMSRYEKHLSAYEKANVKVASSLAFLNSGQAIIFSTAL----TLMMYMGCRGIVT 375

  Fly   509 QTLTVGDFVLFSTYLMELYMPLNWFGTYYRAIQKNFVDMENMFDLLKEEEEIVDAPGCSPLLTAG 573
            ..|||||.|:.:..:.:|.:|||:.|:.||.:::.|.|||.:|.|.:...::.:||....|:..|
pombe   376 SNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQLFSLKRINIQVKEAPDARDLVLKG 440

  Fly   574 GGIEFSNVTFGYSPEKIVLRNVSFTVPAGKTVAIVGPSGAGKSTIMRLLFRFYDVQTGAILIDGQ 638
            |.|:|.||.|.|:|.:.:|...||.:|||..||.||.||.|||||:||||||||..:|.||||.|
pombe   441 GSIQFDNVHFSYNPNRPILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKILIDNQ 505

  Fly   639 NIKLVQQQSLRKAIGVVPQDTVLFNNTIFYNIEYAKLGASDEAVYEAARAADIHERILGFPEKYE 703
            .:..:...|||||||||||||.|||:||.|||.|....||::.:.|||:.|.||:.|..|||.|:
pombe   506 RLDQITLNSLRKAIGVVPQDTPLFNDTILYNIGYGNPKASNDEIVEAAKKAKIHDIIESFPEGYQ 570

  Fly   704 TKVGERGLRLSGGEKQRVAIARTLLKAPIIVLLDEATSALDTHTE----RNIQAALARVCANRTT 764
            ||||||||.:|||||||:|::|.|||.|.|:..|||||||||:||    |||...:..  :::|:
pombe   571 TKVGERGLMISGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALLRNINDLIKG--SHKTS 633

  Fly   765 IIVAHRLSTIIHADEILVLQQGSIAERGRHEELVLREDGIYADMWQQQLKNLDAEQSGGSDN--G 827
            :.:||||.||...|.|.||::|.:.|:|.||:| :.::.:|..||..|      |...|..|  |
pombe   634 VFIAHRLRTIKDCDIIFVLEKGRVVEQGSHEQL-MAKNSVYTSMWHSQ------ESPFGESNKSG 691

  Fly   828 DA 829
            ||
pombe   692 DA 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hmt-1NP_650503.1 MTABC_N 3..241 CDD:292803 9/40 (23%)
ABC_membrane 255..530 CDD:279056 80/290 (28%)
ATM1 314..811 CDD:227590 214/503 (43%)
ABCC_ATM1_transporter 576..812 CDD:213220 129/239 (54%)
atm1NP_594288.2 ABC_membrane 123..397 CDD:279056 80/290 (28%)
ATM1 182..677 CDD:227590 212/501 (42%)
ABCC_ATM1_transporter 443..680 CDD:213220 129/239 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5265
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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