DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-d and Apoltp

DIOPT Version :9

Sequence 1:NP_732076.1 Gene:cv-d / 41921 FlyBaseID:FBgn0265048 Length:1470 Species:Drosophila melanogaster
Sequence 2:NP_995670.2 Gene:Apoltp / 34283 FlyBaseID:FBgn0032136 Length:4333 Species:Drosophila melanogaster


Alignment Length:1656 Identity:308/1656 - (18%)
Similarity:563/1656 - (33%) Gaps:533/1656 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 QMLYEYEGNVLVGAKPQDEGHQAPPTTGWIVRGKLTLQRQSELVL----AAALVIDDVTL----- 85
            :.||:|:..|.|..:....|..:         ..|.|:...|:..    ...|.|:|..|     
  Fly    49 EQLYKYQYTVAVRTEFAGSGDNS---------SDLLLKSDLEIFFPKPCEGYLRINDAKLYDTLD 104

  Fly    86 ------NNSGEKF--------LQNKE--------MYPPYKPFKIALTK--------DGAISHVVF 120
                  ::|.||.        |.|:|        |:|....|.:.|||        ||.||.|..
  Fly   105 ELNDNESDSSEKTKEYDYYDNLANEESESQNYDNMHPKSSDFNVDLTKNLLRFAFHDGLISEVCP 169

  Fly   121 KEGDPIWSMNFKRAIASVLQFQMKSSGAFVVD----ELGIHGTCRTEYFVSNR-TNYISIRKTPE 180
            :|.:..|.:|.|:.|.|..|..|.   .|.||    |..:.|.|:.:|.:.:. ::|::||||.:
  Fly   170 QEQETPWVLNIKKGILSAFQNTMM---RFDVDANTTETDVSGQCQVQYALEDTDSSYVTIRKTKD 231

  Fly   181 VKTCKPYSEAVHTTRSNVPPNTCEFDHQKSV--IIGNEAIYGMSPHNETGYYLSMAHAKGTTLIH 243
            :.:|: ...|.|:.....|   ..|...|::  |:                 .|.:|...|...:
  Fly   232 INSCR-QRYATHSVLQTTP---YTFRDDKTIWPIL-----------------KSQSHCNLTIDNN 275

  Fly   244 TFESTGEAQFINSELLLNFLNETPIDNPIDIETSMAAEPSNLELQRLDPNDPTGGRSPQQQETLI 308
            .::   |.:.:.:.||:.|.|.:        ..::....|.|:|..::  ..:.|...:|...|:
  Fly   276 VYK---EIKCLETHLLVPFSNAS--------SGALTTSTSRLKLDGVE--SYSAGEFLEQNPELV 327

  Fly   309 AQAGTLLDSLAEALETTEFKFSEPYDSTLSDVIKLLSEMDFDSLTKLYRE-VDIGTSYRQ----- 367
            .:..||:.....|:        :|....:....:||.||.......:.|| :|:.|::.|     
  Fly   328 ERRATLVFDHTPAV--------KPSHDEIKAARELLVEMCRVGFPNIQREFIDVFTNFLQTSKSL 384

  Fly   368 ----------------ETIRNIFHEIIPRIGTKASVFLTHHLVLN-KLTKPQIAVQLLIPMPFHI 415
                            |..||...|.:|.||:.||..:....::| |||| |:|...:..:.| |
  Fly   385 DYKTLSVLLQRSASTCEQGRNHLLESLPFIGSTASYKVMRDQIINEKLTK-QMAHDWMTALSF-I 447

  Fly   416 FELSAELVQKCEDFLNIGPDRPDVRQAAILSFATLIH-----------NVYVAKGIDKEKFEEYV 469
            .....|.::.....|....:|.|....  |....::|           |:.|.:.|:..: .|::
  Fly   448 TRPDEETLETFHSILEYAKNRLDAEYT--LGATAVVHSFCKHHEACEENLRVQQIINLLE-TEFL 509

  Fly   470 QKYFNAYLSDRDFDQKM-LYLQGLNNLQL--GNVANYLEPIVQDPNEHEDLKFQAAWTTLALADR 531
            ..| |.:..:|...::| :.|:||.|:.:  ...|..|:.|:::.....|::...     .||.|
  Fly   510 NLY-NLFKGERRTRERMVILLKGLGNIGVVSSAFAEQLQWIIREDEAPVDIRLHG-----ILAFR 568

  Fly   532 RAE--RIYEVYWPIFESRNASLELRVAAVTLLLISNPTAARLISIHRIIQSETDPHMINYYRTTV 594
            |.:  |....:...:.:...:.|||:.:. |..:..|....:..|..|::.|....:.::..:.:
  Fly   569 RVDCARHRSYFLDNYGNYTLNSELRIYSY-LQAMRCPDYISVGVIKSILEHEEINQVGSFVWSHL 632

  Fly   595 TSISETTYPCYQHLRRLLSYMHRHLPQ--KPESRYWVTGNYIFDYRDSKFGIGAMLQVFLVGDPK 657
            |:::::..|.....:.||  ::..|.:  |.:.|.: :.||.......::..|......::....
  Fly   633 TNLAKSNSPVRIEAQGLL--LNDELSERFKMDIRKF-SRNYEHSLFFDEYNFGTTTDANVIFGTD 694

  Fly   658 SDMPVVAFFKFDTEALGKFTGQLALYIKARGLPDTILNKMQSRNGSDPFTFKSIKALLAMLQAPI 722
            |.:|.:|...|..:..|:.........:|.||.:...|....:.   |.:.:.::..|:.|...:
  Fly   695 SYLPRIASVNFTADLFGQSVNFFEFTARAEGLEELAANAFGPKG---PLSGQLLRKKLSFLNRWL 756

  Fly   723 IN---SKDLHLEFILQMEGKTV------------------------------------------- 741
            .|   .:|..||.:|.::...:                                           
  Fly   757 GNESAEEDDTLENLLSLDNLRLKRKAQEQARASEEEVDEDYDFEESLEGNKRQKRDVSTTRKQEI 821

  Fly   742 ----------LSYYLNQ-------RMF-RQLTYDNILERMQQIIRTDSHINMQTVRWPFMN---- 784
                      |.|..|.       |:| ..|.|.|: |.:.:::...:..|      ||..    
  Fly   822 DRNVDSLGYKLKYDYNNPRAQFGLRVFGNDLRYFNV-ESLVEVMALAAKFN------PFQQAKNV 879

  Fly   785 -----------------RYTVPTVLGT--------SSDVLLQTTVLTSLRGNITEQRNSPITKHT 824
                             .||||..:|.        :|.:.|:.:      ||:.|.  .|.|...
  Fly   880 LSGKEFTYTKSRVFLDASYTVPLAVGLPLAIHAFGASSIDLRVS------GNLDEM--DPPTDWH 936

  Fly   825 LEIDARYSSYASVRSRSYNPFLNLDHEINREQGFLIYIPFSSELHLNES--------GSKCRRYS 881
            .:::.::....||     :....:..::..||.   .|...|.|:.|..        |.....:|
  Fly   937 FDVEGQFKPSVSV-----DVITTMQTDMFWEQS---GIKVKSNLYSNSELVAKLKVRGRNLVSFS 993

  Fly   882 FSRPQNLTSGLSFKSRAVTKTRGLITKTAAAPFEEIMVPE---GRNDVVQLFSYPMTDLGVRLSM 943
            |..|::.....|.:|..:.:.|            |..:|:   .........::|:.|..:.|.|
  Fly   994 FDLPRDKNEIFSVRSELLVQKR------------EEQLPQAGIANRSANSTCTWPVLDQAIGLQM 1046

  Fly   944 --------TTNLNELIKYRGMLL-----------KSEFT---------------ENGFS------ 968
                    .:|..|:  |..:||           ||:.:               :|.||      
  Fly  1047 CSHYSVPDLSNATEI--YPSLLLAGPLNFSLILKKSDLSAKKYVFEYKWDQQEEDNNFSLVFTTP 1109

  Fly   969 GNMVVNALM---------------YIFGFTQLS------------------------SIHLGHD- 993
            |:.|...|:               ::.|..::|                        |:.||.: 
  Fly  1110 GSKVPRVLVANVTKVPDAFNASVAFVNGPNRVSAGCSYDGNPDFRRLDIYLDTNGNRSLDLGMEL 1174

  Fly   994 ---RNFTMLMY----------------------NEKN------------TR-----IEGNFCAED 1016
               ::||..:|                      ||||            |:     |:||....:
  Fly  1175 RRHQDFTAWIYNPRMLLAINGVNITGLAGTVKVNEKNGIKQHDVDLSFETKKLQAVIKGNVVQSE 1239

  Fly  1017 VLKTSDMKGKQIGLTLEHTDHMNE----NHAADAL---------HRWNITLDVLA------STKS 1062
            :..:::|       |:::....|:    |.|...:         :|.|:.|...|      :::|
  Fly  1240 ITTSTNM-------TIKYRFQANKIEEINFAGKLVNNGDKSKTEYRGNMKLQTSAYPKLNFASES 1297

  Fly  1063 NWFKLTGQVQ-----RNSKD------------------DEDDWKACT-------------KLTYE 1091
            .|..|.|..:     .|:.|                  .||.:...|             |:.|.
  Fly  1298 TWLSLQGHTEGMITYNNAPDYVNPNYTSLVRLIFARSHSEDSFLDGTQTRASLELKLPRSKIDYR 1362

  Fly  1092 PLVFTKRPHTLNG---DVVFGLATEESECPEKGSTVQFAARAGPSEHARAFLRSDKISLTDTDFC 1153
            .||..|. |..||   :|:.||    ...|||..|..|:... |..:..|......:::.:.:.|
  Fly  1363 ILVKHKE-HIKNGTEHNVIVGL----KYTPEKEITGLFSVHL-PRRNLFAIDAYMNVTVPEFNSC 1421

  Fly  1154 PKEVLKFSPIPTSRYCKRSNFENFTSITQYDMDLKFDNMPAWFELWSNRLDHLVSALSADKVDSL 1218
            ... ||.:...|..|.   .|.|.:..|.:.:.:|           :|..|.      :.:|.:|
  Fly  1422 TAS-LKVNEKATKDYI---IFINGSWFTGHSVAVK-----------ANYKDR------SSRVQAL 1465

  Fly  1219 HMSQEINISMQTPQDQFRLAVEVNGVKWRFHQIPFFYKLDSKFDAS-HELTFDSGLKRSCSVING 1282
            |     ::.|......|.: ..:| :.:|..|:..||.:.:|:|.. :.||    ::.:.:..|.
  Fly  1466 H-----HLKMIVESPSFNI-TSLN-IIYRRKQLLIFYDIQAKYDQDPYGLT----IQYASNAHNR 1519

  Fly  1283 IVNT-------FDDYLINLREIAVRPDCLTL 1306
            ..|.       ..||.||.:.::.:|..|.|
  Fly  1520 NTNAEVRLKVKERDYWINAKLLSEQPKLLQL 1550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-dNP_732076.1 LPD_N 28..589 CDD:214755 137/643 (21%)
DUF1943 632..>813 CDD:286281 41/273 (15%)
VWD 1277..1435 CDD:295339 9/37 (24%)
ApoltpNP_995670.2 LPD_N 49..633 CDD:214755 137/649 (21%)
DUF1943 665..1012 CDD:286281 58/373 (16%)
DUF1081 1029..1122 CDD:283982 17/94 (18%)
VWD 3741..3908 CDD:295339
C8 3951..4014 CDD:285899
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449995
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4338
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23345
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.