DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pbp45 and snpc-1.2

DIOPT Version :9

Sequence 1:NP_650499.1 Gene:Pbp45 / 41920 FlyBaseID:FBgn0038371 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_499719.1 Gene:snpc-1.2 / 176734 WormBaseID:WBGene00012715 Length:445 Species:Caenorhabditis elegans


Alignment Length:395 Identity:80/395 - (20%)
Similarity:134/395 - (33%) Gaps:108/395 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LFTAQTNHTEVI----ATTLAALHVAKRLSCSRRTTGDVFPASRAQRIGGFFLLYVIYYKQPTHN 103
            |||.:.|..|:|    ...:..|...:...|...      |.|..:|:.|.:.||..||.|...:
 Worm    50 LFTGRHNSAEIIEFNECLLVHCLPYMEECVCPGT------PRSLKERLFGLYSLYTFYYIQQEKH 108

  Fly   104 FIKIEVSP---RTWQELTDYALDLRKDSPERKDTHQI--AYML-WRLTQEQAF------------ 150
            .:|:.:.|   |.::....:.|           |.:|  ||.| .:|.:::|.            
 Worm   109 VVKVRMDPDSSRNFRRFAQFLL-----------TEKIYDAYALCQKLLEDKAIKQVAFISIHDPS 162

  Fly   151 ---RFTALDYCQGL-------DNLVD-------YDRVETVAGAKEQRQSALMQKQQRANGVSLTY 198
               ||...|...|:       |.||:       :|.:    |...:..|.|..|....:.:.|..
 Worm   163 HFKRFYTDDKVSGVSIRTNLNDPLVNVKALVEQFDAL----GVIHKEYSRLKMKLGITSWMKLKD 223

  Fly   199 ELEGLRALDQASQPLCE--------LEAAYNAQKKQLAA-----------GHEHALP-------- 236
            .:|.|:.:.:.|....|        :...::||  |||:           .|..||.        
 Worm   224 PIEELKKIIKTSLQAVESSSGVDEIVHTDHSAQ--QLASRGMQRSSIKDQAHSAALKFSRTRRHR 286

  Fly   237 -------PSQIFGHLREVFADIQSVLGARKSTPDENCTTTSTGNQLEV-RQRVRNKAMYGVEERE 293
                   |::.|    |...|.:....|:::.|.........|....| :.:|.|.|....|:..
 Worm   287 SVKPVIVPAETF----EYAPDPKKKKEAQETMPVSGRNGRKRGRPKSVPKSKVSNPARILYEKLA 347

  Fly   294 PQNQADELEVQLEVNETY-QRRMSSATVFQREL------PADVQQEYEMIEFSDDEEMEVGESEE 351
            ....::.|...|...|.: .|..||....:.||      |.|.|...:..|.|..|::.:.:..|
 Worm   348 EDMISEHLSTDLTEQEAFTDRPQSSLEPQKNELFNWDAAPQDAQISNQTTEPSCGEDIFIEDFGE 412

  Fly   352 VTEEE 356
            ...::
 Worm   413 FKSQD 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pbp45NP_650499.1 SNAPc_SNAP43 5..214 CDD:286846 44/209 (21%)
snpc-1.2NP_499719.1 SNAPc_SNAP43 16..210 CDD:286846 38/180 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160168005
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4746
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15131
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.930

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