DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-E and PRP43

DIOPT Version :9

Sequence 1:NP_476741.1 Gene:spn-E / 41919 FlyBaseID:FBgn0003483 Length:1434 Species:Drosophila melanogaster
Sequence 2:NP_011395.1 Gene:PRP43 / 852757 SGDID:S000003088 Length:767 Species:Saccharomyces cerevisiae


Alignment Length:738 Identity:200/738 - (27%)
Similarity:341/738 - (46%) Gaps:109/738 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 EYYKKFRFNLNRDKNLSIYAKREEILAAINAHPVVIIKGETGCGKTTQVPQYILDEAYKSGKYCN 164
            |:..|:...|...:.|.::|:|:|.|.....:.:::..||||.|||||:||::|.:.....:...
Yeast    78 EFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQ 142

  Fly   165 IVVTQPRRIAAISIANRVCQEREWQQNTVCSFQVGLHRPNSLEDTRLLYCTTGVLLNNLINNKTL 229
            :..|||||:||:|:|.||.:|.:.:......:.:......| ..|.|.|.|.|:||...:.:..|
Yeast   143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS-NKTILKYMTDGMLLREAMEDHDL 206

  Fly   230 THYTHIVLDEVHERDQNMDFLLIVVRRLLATNSRHVKIILMSATIDAKELSDYFTTTNSIPPVIT 294
            :.|:.|:|||.|||....|.|:.::::::.... .:|||:||||:||::...||   |..|.:..
Yeast   207 SRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYF---NDAPLLAV 267

  Fly   295 TNHRRKHSIEKFYRDQLGSIIWNEEDVGHQQVPEINKHGYRAAVKIIVIIDNMERKAAIQSRQSY 359
            ..  |.:.:|.:|                  .||..:....:|::.::.|            .:.
Yeast   268 PG--RTYPVELYY------------------TPEFQRDYLDSAIRTVLQI------------HAT 300

  Fly   360 DEALRYGAVLIFLPGIYEIDTMAENLTCMLENDPNIK------VSIVRCFSLMTPENQRDVFNPP 418
            :||   |.:|:||.|..||:.....::  ||.|..::      :|:...:..:.|..|:.:|.|.
Yeast   301 EEA---GDILLFLTGEDEIEDAVRKIS--LEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360

  Fly   419 P------PGFRKIILTTNIAESSITVPDVSYVIDFCLAKVKVTDTASSFSSLRLTWASKANCRQR 477
            |      || ||::::|||||:|:|:..:.||:|...:|.||.:......||.::..|||:.:||
Yeast   361 PESHNGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQR 424

  Fly   478 AGRVGRLRSGRVYRMVNKHFYQREMPEFGIPEMLRLPLQNSVLKAKVLNMGSPVEILALALSPPN 542
            |||.||.|.|:.:|:..:..:|:|:.|...||:||..|.::||:.|.|.:...|..  ..:.|| 
Yeast   425 AGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPP- 486

  Fly   543 LSDIHNTIL-LLKEVGALYLTVDGIYDPLDGDLTYWGTIMSRLPLDTRQSRLIILGYIFNMLEEA 606
               ...|:: .|:|:..|....|      :|:||..|.:.|:.|||...:.::|..:.|...:|.
Yeast   487 ---APETMMRALEELNYLACLDD------EGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEI 542

  Fly   607 IIIAAGLSTPGLFAHEGGRSQLGDSFWMHYIFSDGSGSDLVAIWRVYLTYLNIVENGHDQES--- 668
            :.|.|.||.|.:|.......:..|.....:...||.          ::|.||:.......|:   
Yeast   543 LTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGD----------HITLLNVYHAFKSDEAYEY 597

  Fly   669 -AIRWAKRFHVSLRSLK---EIHLLVQELRVRCTHLGLIPFPVNPNQMMDDREKAIMLKVIIAGA 729
             ..:|.:..:::.|||.   .|...::.|..| .:|.|........:..|:..||      :|..
Yeast   598 GIHKWCRDHYLNYRSLSAADNIRSQLERLMNR-YNLELNTTDYESPKYFDNIRKA------LASG 655

  Fly   730 FYPNYFTRSKESCA--------DTDRNIY-QTISGHDPCRTVYFTNFKPAYMGELYTRRIKELFQ 785
            |:..  ...|.|.|        :.|..|: .|:.||| ...|.:..|  ....:.|.|.:..:..
Yeast   656 FFMQ--VAKKRSGAKGYITVKDNQDVLIHPSTVLGHD-AEWVIYNEF--VLTSKNYIRTVTSVRP 715

  Fly   786 E--VRIPPENMDVT-FQEGSQKV 805
            |  :.|.|...|:: ||:|..|:
Yeast   716 EWLIEIAPAYYDLSNFQKGDVKL 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-ENP_476741.1 HrpA 113..>697 CDD:224557 168/603 (28%)
TUDOR 892..1016 CDD:395449
PRP43NP_011395.1 HrpA 55..753 CDD:224557 200/738 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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