DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-E and Zcchc17

DIOPT Version :9

Sequence 1:NP_476741.1 Gene:spn-E / 41919 FlyBaseID:FBgn0003483 Length:1434 Species:Drosophila melanogaster
Sequence 2:NP_001102737.1 Gene:Zcchc17 / 500555 RGDID:1565267 Length:241 Species:Rattus norvegicus


Alignment Length:149 Identity:34/149 - (22%)
Similarity:49/149 - (32%) Gaps:51/149 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   962 RPENQSNRQPMFYVRF-------IDYGNCTLLP-MQLMRLMPRELTEQYGDLPPRVFECRLAMVQ 1018
            |||...| .|..|..|       .|||....:| .:...|:.|          ..:..||:.  :
  Rat     5 RPETMEN-LPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHR----------THMSSCRVD--K 56

  Fly  1019 PSSVVS-GNNRW-----STAANDMLKTVAQCGLI------DIEVYSLFNNVAAVLIHMRDGIIND 1071
            ||.:|. |:..|     ....||.:|......::      |::.    |||.......|      
  Rat    57 PSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDP----NNVIIEQEERR------ 111

  Fly  1072 KLVELMLCRRSDEDYMSRK 1090
                    |||.:||..:|
  Rat   112 --------RRSFQDYTGQK 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-ENP_476741.1 HrpA 113..>697 CDD:224557
TUDOR 892..1016 CDD:395449 15/61 (25%)
Zcchc17NP_001102737.1 S1_pNO40 13..86 CDD:240191 19/84 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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