DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spn-E and smgl-2

DIOPT Version :9

Sequence 1:NP_476741.1 Gene:spn-E / 41919 FlyBaseID:FBgn0003483 Length:1434 Species:Drosophila melanogaster
Sequence 2:NP_001294374.1 Gene:smgl-2 / 177135 WormBaseID:WBGene00021365 Length:1089 Species:Caenorhabditis elegans


Alignment Length:1125 Identity:268/1125 - (23%)
Similarity:429/1125 - (38%) Gaps:331/1125 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDQEVMD------FFDFSKELKRVAAAPQGYISSDPRLMATKFKSSEVPNRELIGTDYVSKIVAK 59
            :|||..:      |..|..:....:...:|..|::..|:.|:.||.:         .|.::...:
 Worm     4 LDQEEYEKHRGALFRHFLPDEPGTSGNRRGEKSTEQELIDTQRKSIQ---------SYFNRFFRE 59

  Fly    60 EKCLLNGTLLNEQPQGKRIRTLDDLD-TDDEGEETEIRRDDE----------------------- 100
            .|    |. .|:.....|:: .|||. ..|.|....||...|                       
 Worm    60 RK----GE-TNDHFDVNRVK-FDDLGIPQDTGGLNRIRFKGENLGIMPTQLGHITPWLYRHFEYA 118

  Fly   101 YYKKFRFNLNR-----------DKNLSIYAKREEILAAINAHPVVIIKGETGCGKTTQVPQYILD 154
            |:...:||.::           .|.|.|..:..||:..:..:.|:|:.|:|||||:||||||:| 
 Worm   119 YHVALQFNQHQKFQKLQKLRKLQKELPIAERAGEIVELLKTNQVLIVAGDTGCGKSTQVPQYLL- 182

  Fly   155 EAYKSGKYCNIVVTQPRRIAAISIANRVCQEREWQQNTVCSFQVGLHRPNSLEDTRLLYCTTGVL 219
               |:| :..:..|||||||..::|.||..|...|..:..:||:......| :.|:||:.|.|:|
 Worm   183 ---KAG-FTGVACTQPRRIACTALARRVAYETLNQYGSEVAFQIRFETTKS-QKTKLLFLTEGLL 242

  Fly   220 LNNLINNKTLTHYTHIVLDEVHERDQNMDFLLIVVRRLLATNSRHVKIILMSATIDAKELSDYFT 284
            |..:..:..|..|..|:|||||||....| |||.:.|.|.|....:|:|||||||:......||.
 Worm   243 LRQMEKDSLLEKYNVIILDEVHERHLTSD-LLIGLLRDLCTKRDDLKLILMSATINLDLFKGYFE 306

  Fly   285 TTNSIPPVITTNHR------RKHSIEKFYRDQLGSIIWNEEDVGHQQVPEINKHGYRAAVKIIVI 343
            ..    ||:....|      |.|.|::|.            |...::..:|:...|   :||:.:
 Worm   307 GA----PVVQVPGRLFPIDVRWHPIKQFI------------DQSDKKTHKIDPEPY---LKILEL 352

  Fly   344 IDNMERKAAIQSRQSYDEALRYGAVLIFLPGIYEIDTMAENLTCMLENDPNIKVS--IVRCFSLM 406
            ||           :.:....| |..||||.|:.||..:||:    |:|...:...  |:...|.:
 Worm   353 ID-----------KQFPSTQR-GDALIFLNGVAEISMVAEH----LKNYAELTNGWIILMLHSTL 401

  Fly   407 TPENQRDVFNPPPPGFRKIILTTNIAESSITVPDVSYVIDFCLAKVKVTDTASSFSSLRLT--WA 469
            :.|.|..||:..|.|.||.||:||:||:|:|:..:.:|||  ..||.:........:.:||  |.
 Worm   402 SVEEQDKVFDQAPVGIRKCILSTNVAETSVTIDGIRFVID--SGKVNLIKHEPGTGTQKLTEFWV 464

  Fly   470 SKANCRQRAGRVGRLRSGRVYRMVNKHFYQREMPEFGIPEMLRLPLQNSVLKAKVLNMGSPVEIL 534
            |||:..||.||.||...|..||:.::..::: |.:|.:.|:.|:.||...||...||:|......
 Worm   465 SKASANQRKGRAGRTGPGICYRLYSQEQFEK-MDDFTVSEINRVSLQEMALKMISLNLGLDPRTF 528

  Fly   535 ALALSPPNLSDIHNTILLLKEVGALYLTVDGIYDPLDGD---LTYWGTIMSRLPLDTRQSRLIIL 596
            .....|.  .|:.|.       |...|....:.....||   ||..|.::|:||::...:::::.
 Worm   529 PFIEKPS--EDVLNE-------GLEVLKFQRVLRSDRGDILTLTALGNMVSKLPVEVPIAKMLVY 584

  Fly   597 GYIFNMLEEAIIIAAGLSTPGLFAHEGGR------------SQLGDSFWMHYIFSDGSGSDLVAI 649
            |.:.:.||..:.:|||||....|.:...|            |.|||.|.:..||.:         
 Worm   585 GCVVDELEVMLTVAAGLSVQSPFTNRSYRELEIVERRASLTSPLGDPFTLISIFRE--------- 640

  Fly   650 WRVYLTYLNIVENGHDQESAIRWAKRFHVSLRSLKEIHLLVQELRVRCTHLGLIP---------- 704
            |.:...:         :.:|.||.....:....|.||..|..:.|......||:.          
 Worm   641 WVLQKAF---------EGTARRWTMENGIDEHRLYEISKLRAQYRQILEDAGLVEKASAAETGED 696

  Fly   705 ---------------FPVNPNQMMDDREKAIM--------------------------------- 721
                           |.:..:|..:||.:.::                                 
 Worm   697 DSRQRRIDQGEKRKLFDLKKSQRNNDRRQKVLNANKHFDKILEDKEEEDLEAEKDPLKADVKTVE 761

  Fly   722 --------------------------LKVIIAGAFYPNYFTRSKESCADTDRNIYQTISGHDPCR 760
                                      ::||||...|||:                   |..||..
 Worm   762 FLLSHKQRDVENIRKTHKISRKTAEVVRVIIAAGLYPNF-------------------SILDPVN 807

  Fly   761 TVYFTNFKPAYMGELYTRRIKELFQEV-------RIPPENMDVTFQEGSQKVFVTFKQDDWIEGS 818
                   |..|..|::|....:.|.::       :..||.:|.  ::||             :|.
 Worm   808 -------KYGYGQEMFTHTRLKPFTQIHPNSSIAQYHPETIDP--RQGS-------------DGF 850

  Fly   819 SK--YVPVSGRV--QSEVYKAVMMRQNRVERPIHIMNPSAFMSYVQQR----------GIGDVIE 869
            |:  .:|..|.:  .::.|...:|       |:    |:.:...|.|:          .|.|.:|
 Worm   851 SRLHQIPFYGLLLETTKPYICNVM-------PV----PAVYTLLVAQKIVIEDDWSQLSIDDFLE 904

  Fly   870 GRWIPPTKPLNVELLALPSVFDKTISGSITCIVNCGKFFFQPQSFEECIRNMSEIFNAPQQLRNY 934
            .|:...|...:|.|.|....::.|...:...:...|                   |:..::|..|
 Worm   905 LRFRSSTDCRSVLLDAKEIRYELTKGLAAKLVGEAG-------------------FSGRRRLAKY 950

  Fly   935 V--TNASAIAKGMMVLAKRD 952
            :  .|.|.:.||:.|..:|:
 Worm   951 IDLLNQSIVEKGIEVAVRRN 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-ENP_476741.1 HrpA 113..>697 CDD:224557 186/608 (31%)
TUDOR 892..1016 CDD:395449 11/63 (17%)
smgl-2NP_001294374.1 DEXDc 130..330 CDD:214692 77/210 (37%)
DEXDc 161..296 CDD:238005 62/141 (44%)
Helicase_C 350..480 CDD:278689 50/147 (34%)
HA2 561..635 CDD:214852 21/73 (29%)
OB_NTP_bind <775..888 CDD:285018 30/164 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278674at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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