DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spn-E and Dhx29

DIOPT Version :9

Sequence 1:NP_476741.1 Gene:spn-E / 41919 FlyBaseID:FBgn0003483 Length:1434 Species:Drosophila melanogaster
Sequence 2:XP_002729053.2 Gene:Dhx29 / 100362324 RGDID:2318361 Length:1366 Species:Rattus norvegicus


Alignment Length:898 Identity:245/898 - (27%)
Similarity:409/898 - (45%) Gaps:161/898 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 YVSKIVAKEKCLLNGTLLNEQPQGKRIRTLDDLDTDDEGEET----------------------- 93
            :::|:::|.|       ..:|.|.:|....:..:|.::.||:                       
  Rat   489 FIAKLLSKLK-------QQQQLQQQRQHPENKTETAEDPEESWENLVSDEDLSALSLEPTGAEDL 546

  Fly    94 ----EIRRDDEYYKKFRFNLNRDKNLSIYAKREEILAAINAHPVVIIKGETGCGKTTQVPQYILD 154
                .:.|..:...|::..|...:.|.::..|..|:..:..|.||::.||||.||:||||.::|:
  Rat   547 EPVRNLFRRLQSTPKYQRLLKERQQLPVFKHRASIVETLKRHRVVVVAGETGSGKSTQVPHFLLE 611

  Fly   155 EAYKS---GKYCNIVVTQPRRIAAISIANRVCQEREWQ-----QNTVCSFQVGLHRPNSLEDTRL 211
            :...:   .:.||||.||||||:|:|:|.|||:|...:     :|::|.:|:.:....| |.|||
  Rat   612 DLLLNDCGARKCNIVCTQPRRISAVSLATRVCEELGCEGGPGGRNSLCGYQIRMESRAS-ESTRL 675

  Fly   212 LYCTTGVLLNNLINNKTLTHYTHIVLDEVHERDQNMDFLLIVVRRLLATNSRHVKIILMSATIDA 276
            |||||||||..|..:..|...:|:::||||||....||||::::.:|...| .:.:||||||:|:
  Rat   676 LYCTTGVLLRKLQEDGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKRS-DLHLILMSATVDS 739

  Fly   277 KELSDYFTTTNSIPPVITTNHRRKHSIEKFYRDQL----GSIIWNEEDVGHQQVPE-----INKH 332
            .:.|.|||..    |::..: .|.:.:|.|:.:.:    |.|:..:.:...:.:.|     ||..
  Rat   740 DKFSTYFTHC----PILRIS-GRSYPVEVFHLEDIVEETGFILEKDSEYCQKFLEEEEEITINVT 799

  Fly   333 GYRAAVKIIVIIDNMERKAAIQS---------RQSYDEALRY----------------------- 365
            .....:|      ..:....:||         .|.|....:|                       
  Rat   800 SKAGGIK------KYQECIPVQSGASPELSPFYQKYSSRTQYAVLYMNPHKINLDLILELLVYLD 858

  Fly   366 ---------GAVLIFLPGIYEIDTMAENLTCMLENDPNI---KVSIVRCFSLMTPENQRDVFNPP 418
                     |||||||||:..|    :.|..:|.||...   :..::...|:::.::|...|..|
  Rat   859 KSPQFRNIEGAVLIFLPGLAHI----QQLYDLLSNDRRFYSERYQLIALHSVLSTQDQAAAFMLP 919

  Fly   419 PPGFRKIILTTNIAESSITVPDVSYVIDFCLAKVKVTDTASSFSSLRLTWASKANCRQRAGRVGR 483
            |||.|||:|.|||||:.||:|||.:|||....|......:|..|||..|:.|||:..||.||.||
  Rat   920 PPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGR 984

  Fly   484 LRSGRVYRMVNKHFYQREMPEFGIPEMLRLPLQNSVLKAKVLNMGSPVEILALALSPPNLSDIHN 548
            :|.|..:|:..:..::..: |:.:||:||:||:...|.....::|||.:.|:.||.||....|.|
  Rat   985 VRDGFCFRLYTRERFEGFL-EYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQPQVISN 1048

  Fly   549 TILLLKEVGALYLTVDGIYDPLDGDLTYWGTIMSRLPLDTRQSRLIILGYIFNMLEEAIIIAAGL 613
            .:.||:::||.        :|.:..||..|..::.||::.:..:::|.|.||..||....:||.:
  Rat  1049 AMNLLRKIGAC--------EPSEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVM 1105

  Fly   614 STPGLFAHEGGRSQLGDSFWMHYIFSDGSGSDLVAIWRVYLTYLNIVENGHDQESAIRWAKRFHV 678
            :....|....||....|........:|   ||.:.|:..||.:....:.| ...|.|.:.:|..:
  Rat  1106 TEKSPFITPIGRKDEADLAKSSLAVAD---SDHLTIYNAYLGWKKAQQEG-GFRSEISYCQRNFL 1166

  Fly   679 SLRSLKEIHLLVQELRVRCTHLGLIPFPVNPN-------QMMDDREKAIMLKVIIAGAFYPN--- 733
            :..||..:..:.|||.......|   |..:.:       |.:..::.| :||.::|...|.:   
  Rat  1167 NRTSLLTLEDVKQELMKLVRAAG---FSSSTSWEGKKGPQALSFQDIA-LLKAVLAAGLYDSVGK 1227

  Fly   734 -YFTRS-----KESCADTDRNIYQTISGHDPCRTVYFTNFKPAYMGELYTRRIKELFQEVRIPPE 792
             ..|:|     |.:|      :.:|..|...............|...||..:::  :..|.:...
  Rat  1228 IMCTKSVDVTEKLAC------MVETAQGKAQVHPSSVNRDLQTYGWLLYQEKVR--YARVYLRET 1284

  Fly   793 NMDVTFQEGSQKVFVTFKQDDWIEGSSKYVPVSGRV--QSEVYKAVMMRQNRV 843
            .:...|.      .:.|..|..::...:.:.|.|.:  |:.|..||:.:|.||
  Rat  1285 TLITPFP------VLLFGGDIEVQHRERLLSVDGWIYFQAPVKIAVIFKQLRV 1331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-ENP_476741.1 HrpA 113..>697 CDD:224557 203/644 (32%)
TUDOR 892..1016 CDD:395449
Dhx29XP_002729053.2 HrpA 531..1314 CDD:224557 229/830 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278674at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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