DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spn-E and dhx57

DIOPT Version :9

Sequence 1:NP_476741.1 Gene:spn-E / 41919 FlyBaseID:FBgn0003483 Length:1434 Species:Drosophila melanogaster
Sequence 2:NP_001163976.1 Gene:dhx57 / 100124795 XenbaseID:XB-GENE-976876 Length:1180 Species:Xenopus tropicalis


Alignment Length:783 Identity:234/783 - (29%)
Similarity:372/783 - (47%) Gaps:135/783 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ELKRVAAAPQGYISSDPRLMATKFKSSEVPNRELIGTDYVSKIVAKEKCLL----NGTLLNEQPQ 74
            |:.::.|......|..|.|:.|  .:|:.....:|   .::|.||.:|..|    :|....::|.
 Frog   419 EIVKLLANTHHKYSIPPPLLLT--ATSDTRKNPVI---TINKPVAPDKPSLLSYPSGARKGQKPI 478

  Fly    75 GKRIRTLDDLDTD--DEGEETEIRRDDEYY--------KKFRFNLNR------------------ 111
            ...|...:|.|.|  |:.|...:..::|.|        ||:.||.|:                  
 Frog   479 KMDISKPNDTDEDSLDDLESESVLVENESYANLKKKQAKKYSFNSNKAVAAENAKICKHYRAKKT 543

  Fly   112 ----------DKNLSIYAKREEILAAINAHPVVIIKGETGCGKTTQVPQYILDEAYKS--GKYCN 164
                      .:.|..:.|:::||..::.:.|:::.|.||||||||:||:|||.:.|.  ....|
 Frog   544 TRNYQSMLEERQKLPAWQKQDQILELLSKYQVLVVSGMTGCGKTTQIPQFILDASLKGPPSHVSN 608

  Fly   165 IVVTQPRRIAAISIANRVCQEREWQQNTVCSFQVGLHRPNSLEDTRLLYCTTGVLLNNLINNKTL 229
            |:.||||||:|||:|.||.|||..:......:|:.|....|.. ||||||||||||..|..:.||
 Frog   609 IICTQPRRISAISVAERVAQERAERVGISVGYQIRLESVKSAA-TRLLYCTTGVLLRRLEGDTTL 672

  Fly   230 THYTHIVLDEVHERDQNMDFLLIVVRRLLATNSRHVKIILMSATIDAKELSDYFTTTNSIPPVIT 294
            .:.||:|:||||||.:..||||:|::.::.... .:||||||||::|:..|.||...    ||:.
 Frog   673 QNVTHVVVDEVHERTEESDFLLLVLKDVMVLRP-DLKIILMSATLNAELFSCYFQDC----PVLH 732

  Fly   295 TNHRRKHSIEKFYRDQLGSIIWNEED-----VGHQQVPEINKHGYRAAVKIIVIIDNMER----- 349
            ...|.....:.|..|.:....:..||     ...:|:|..:....:.......::|.:|:     
 Frog   733 IPGRTFPVDQYFLEDAIAKTRYVLEDGSPYQRSSKQLPGPDSARGKKGNSYNELLDELEQQISSS 797

  Fly   350 -------------------------------KAAIQSRQSYD---------EAL---------RY 365
                                           |:.|::..|.|         |||         .|
 Frog   798 LRIQDSKIVKDSVPDQQLNVKELSVRYNGISKSVIKTLSSMDLDKINLDLIEALLEWIVNGDHSY 862

  Fly   366 --GAVLIFLPGIYEIDTMAENL--TCMLENDPNIKVSIVRCFSLMTPENQRDVFNPPPPGFRKII 426
              ||||:||||:.||.|:.:.|  ..:..|..:.:..|....|.::.:.|:.||..||||..|||
 Frog   863 PPGAVLVFLPGLAEIKTLYDQLQSNALFNNRRSKRCVIYPLHSSLSSDEQQSVFLKPPPGVTKII 927

  Fly   427 LTTNIAESSITVPDVSYVIDFCLAKVKVTDTASSFSSLRLTWASKANCRQRAGRVGRLRSGRVYR 491
            ::|||||:|||:.||.||||....:.|..|...|..||..||.|:||..||.||.||:.||..:.
 Frog   928 ISTNIAETSITIDDVVYVIDSGKMREKRYDPGKSMESLEDTWVSRANAMQRKGRAGRVASGVCFH 992

  Fly   492 MVNKHFYQREMPEFGIPEMLRLPLQNSVLKAKVLNMGSPVE---ILALALSPPNLSDIHNTILLL 553
            :...|.||.::.:..:||:.|:||:...|:.|:|.|.|...   :.|..:.||.:..:|.:.:.|
 Frog   993 LFTSHHYQYQLLDQQLPEIQRIPLEQLCLRIKILEMFSECRLDLVFARLIEPPRMESLHASKIRL 1057

  Fly   554 KEVGALYLTVDGIYDPLDGDLTYWGTIMSRLPLDTRQSRLIILGYIFNMLEEAIIIAAGLSTPGL 618
            :::|||         ..:..||..|..::.||:|.|..:|::.|.||..|:.|:.|||.|:....
 Frog  1058 QDLGAL---------TKEEKLTPLGYHLASLPVDVRIGKLMLFGAIFRCLDPALTIAASLAFKSP 1113

  Fly   619 FAHEGGRSQLGDSFWMHYIFSDGSGSDLVAIWRVYLTYLNIVENGHDQESAIRWAKRFHVSLRSL 683
            |.....:.:..:.....:..::   ||.:|:.:.|..:.::::  ....:|.::.:...:|:|.|
 Frog  1114 FVCPWDKKEEANKKKQEFATAN---SDHLALLQAYQAWSSVIK--ESSRAAYQYCRDNFLSVRVL 1173

  Fly   684 KEI 686
            :||
 Frog  1174 QEI 1176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-ENP_476741.1 HrpA 113..>697 CDD:224557 206/642 (32%)
TUDOR 892..1016 CDD:395449
dhx57NP_001163976.1 UBA_DHX57 185..222 CDD:270502
RWD 247..417 CDD:283440
zf-CCCH 307..329 CDD:279036
DEXDc 563..743 CDD:214692 82/185 (44%)
DEXDc 574..716 CDD:238005 72/143 (50%)
Helicase_C 849..985 CDD:278689 58/135 (43%)
HA2 1060..1142 CDD:214852 24/93 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278674at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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