DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc3A and arpc3

DIOPT Version :9

Sequence 1:NP_650498.3 Gene:Arpc3A / 41917 FlyBaseID:FBgn0038369 Length:177 Species:Drosophila melanogaster
Sequence 2:NP_001002114.1 Gene:arpc3 / 415204 ZFINID:ZDB-GENE-040625-107 Length:178 Species:Danio rerio


Alignment Length:178 Identity:103/178 - (57%)
Similarity:140/178 - (78%) Gaps:1/178 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPAYHSQIKEV-RQQVGNMAILPLRTQVRGPAPSANIESDIIDESLYYFKANVFFRTYEIKSDVD 64
            ||||||.:.:. .:.|||||:|||:||.:|||.....::|||||::|||||||||:.||||::.|
Zfish     1 MPAYHSALMDADTKLVGNMALLPLKTQFKGPAARETKDTDIIDEAIYYFKANVFFKNYEIKNEAD 65

  Fly    65 RVLIYVTLYITECLKKLNRSTSKAQGQQDMYSLAISKFDIPGDAGFPLNAVYAKPQTAQDADLMR 129
            |.|||:||||:||||||.:.:|:.||:::||:|.|:.|.|||:.||||||:||||.:.|:.:.||
Zfish    66 RTLIYITLYISECLKKLQKCSSRGQGEKEMYTLGITNFPIPGEPGFPLNAMYAKPSSKQEEENMR 130

  Fly   130 QYLLQLRHETGNRVLEKVFNTEDGKPNKWWTCFAKKKFMEKSLAGPGQ 177
            .||.|:|.|||.|:.::||:.:..||:|||.||.||:||.|||:.|||
Zfish   131 AYLQQIRQETGLRLCDRVFDPQTDKPSKWWVCFVKKQFMNKSLSAPGQ 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc3ANP_650498.3 P21-Arc 1..172 CDD:397948 98/171 (57%)
arpc3NP_001002114.1 P21-Arc 1..173 CDD:281983 98/171 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596923
Domainoid 1 1.000 221 1.000 Domainoid score I2541
eggNOG 1 0.900 - - E1_KOG3155
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4178
Inparanoid 1 1.050 228 1.000 Inparanoid score I3442
OMA 1 1.010 - - QHG54322
OrthoDB 1 1.010 - - D1451115at2759
OrthoFinder 1 1.000 - - FOG0004013
OrthoInspector 1 1.000 - - otm24590
orthoMCL 1 0.900 - - OOG6_102731
Panther 1 1.100 - - LDO PTHR12391
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2769
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.770

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