DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-IIb and AMS1

DIOPT Version :9

Sequence 1:NP_001262614.1 Gene:alpha-Man-IIb / 41913 FlyBaseID:FBgn0026616 Length:1249 Species:Drosophila melanogaster
Sequence 2:NP_011359.1 Gene:AMS1 / 852721 SGDID:S000003124 Length:1083 Species:Saccharomyces cerevisiae


Alignment Length:867 Identity:171/867 - (19%)
Similarity:303/867 - (34%) Gaps:239/867 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 KCYELIQSNTNITASEEHSKFDFQPEWMRSKEYWDRGFEERFDAQKKDKQRPPLKIIVVPHSHND 179
            ||.||:|                       :||:| .|.|.....::.:.:....:..:.:.|.|
Yeast   260 KCRELLQ-----------------------REYFD-SFLESSKVYEQGESQVLTNVYGIGNCHID 300

  Fly   180 PGWLKTFTNYFQSDSRQIL---NLLVTKMQEYTDMTFIWSEISFLQLWWDQAHPT-KQRALKRLI 240
            ..||..|.    ...|:|:   :...|.|..:.:..|:.|:....: |..:.||. ..:.|...|
Yeast   301 TAWLWPFA----ETRRKIVRSWSSQCTLMDRFPEYKFVASQAQQFK-WLLEDHPEFFNKVLIPKI 360

  Fly   241 DAGRIEITTGGWVMTDEANVHIYPMLDQLIEGHQWLKNNLNVTPKVGWSIDPFGHGSTVPYLLSG 305
            ...:.....|.||..|........:..|...|.::...:..:..|:.|..|.||:.|.:|.|...
Yeast   361 QQSQFFAVGGTWVENDTNIPSGESLARQFFFGQRFFLKHFGLKSKIFWLPDTFGYSSQMPQLCRL 425

  Fly   306 ANFEGTIIQRIHYAWKQWFARQQSGDFIWKPYWRSRKDKDSEAGSLLTHNMPFDIYSIKGSCGPH 370
            :..:..:.|::  :|....:...| .|.|         ...:...||||..|.:.|:.....|. 
Yeast   426 SGIDKFLTQKL--SWNNINSFPHS-TFNW---------AGIDGSQLLTHMPPGNTYTADSHFGD- 477

  Fly   371 PFICLNFDFRKIPGEYTEYSVKAQFITDDNLESKAQLLLEQYARTASLFPHNVALIP---VG--- 429
              :.......|.|..|.  |....:...|......:.:|::..|..|:...|..:||   ||   
Yeast   478 --VLRTAKQNKTPEYYG--SGLMLYGKGDGGGGPTEEMLQKMRRIRSMNNRNGNVIPKLQVGITV 538

  Fly   430 DDFRYNKDREVDQQYQNYKKLIDHIMANRRLYNADIRFGTPSDYFEAIKERMKDHTPGFPTFKGD 494
            |:|                                        |.:.:|...:.|  ..||:.|:
Yeast   539 DEF----------------------------------------YDDILKRTNQGH--DLPTWSGE 561

  Fly   495 FFVYSDIFSEGRPAYWSGYFTTRPFYKLLSSELE-HQLRSAEIVFTLAYNTARQAKRENAIKIYE 558
            .:     |...|..|.| ...|:...:|  ||:: |.|.......::.|..:.:...:...:::|
Yeast   562 LY-----FEFHRGTYTS-QAQTKKLMRL--SEIKLHDLEWIAAKTSVLYPDSYKYPSKQINELWE 618

  Fly   559 KNYELIINARRNLGLFQHHDAITGTSKAAVMRDYAMRLFESTQNMVKMQESCLELLLQKGQPRHH 623
                       |:.|.|.||.:.|:....|.:..|:.:.   .|:||...|.::..:|       
Yeast   619 -----------NVLLCQFHDVLPGSCIEMVYKYEAVPML---HNVVKECTSLIDKTVQ------- 662

  Fly   624 GFLLSEFERDNFNKLPRKMPIQMANGDESTPTVPAGEGGAGGSSSSGSVGSFVLYNSLAQKRLEV 688
             ||.|:.:.|         .::|.....|.|...:.|....||.:| ||..:..|..||..:|:|
Yeast   663 -FLQSQSKAD---------LVEMRTLTWSKPEKVSEECSLNGSYTS-SVTGYDDYIVLANGKLKV 716

  Fly   689 VTLRVQHPNVKIVNDKGVELNHIQINPVWNITDTYEQGLGTSVSGTV-GRIRTSTRQFEVMFVAE 752
            :          |....||            ||...::.||.....|. ||.:....||   .:.:
Yeast   717 I----------ICKKTGV------------ITSITDETLGVEYLDTEHGRNKLGANQF---VIYD 756

  Fly   753 LEPL----------SLSTY-------RVQVD---------EVNFK-------RNIATIYCDDCTE 784
            .:||          |::.|       :|||.         ||.|:       :::.::.....|:
Yeast   757 DKPLGWQAWDTELYSVNQYKYVTKPKKVQVSCNTKEKCAVEVIFQISEKCKIKSVISLNATAVTD 821

  Fly   785 SQPASVSPPEEIESSPTSVFEARGKPAGDIQLENP-HMR---LLFDEKSGFLKTITRKNQKKELL 845
            ::.:.|.....:|:     ::||.|   .:::|.| ::|   ..::.:.|..|..|..|...::.
Yeast   822 AKLSKVDISTTVEN-----WDARNK---FLKVEFPVNIRNDFASYETQFGITKRPTHYNTSWDVA 878

  Fly   846 KPLQCNIKFAAYRSAQFHSGA-------YLFKT-----------DPEQSEAEKEVLEGYTDMRII 892
            |...|:.|||.|  :::..|.       |.|.|           .|:..:|..::  |..:::..
Yeast   879 KFEVCHHKFADY--SEYSKGVSILNDCKYGFSTHGNLMRLSLLRSPKAPDAHADM--GTHEIKYA 939

  Fly   893 I--TSGPIASDVTVIYGPFLAH 912
            |  ..|.::||...     |||
Yeast   940 IYPHRGALSSDTVK-----LAH 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IIbNP_001262614.1 PLN02701 148..1246 CDD:178304 164/834 (20%)
GH38N_AMII_GMII_SfManIII_like 167..514 CDD:212120 67/356 (19%)
Alpha-mann_mid 508..596 CDD:286360 18/88 (20%)
Glyco_hydro_38C 813..1241 CDD:285047 27/124 (22%)
AMS1NP_011359.1 AMS1 44..1083 CDD:223460 171/867 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344083
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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