DRSC/TRiP Functional Genomics Resources

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Protein Alignment alpha-Man-IIb and LManV

DIOPT Version :9

Sequence 1:NP_001262614.1 Gene:alpha-Man-IIb / 41913 FlyBaseID:FBgn0026616 Length:1249 Species:Drosophila melanogaster
Sequence 2:NP_001285763.1 Gene:LManV / 34205 FlyBaseID:FBgn0032068 Length:982 Species:Drosophila melanogaster


Alignment Length:1162 Identity:280/1162 - (24%)
Similarity:461/1162 - (39%) Gaps:309/1162 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 LKIIVVPHSHNDPGWLKTFTNYF--------QSDSRQILNLLVTKMQEYTDMTFIWSEISFLQLW 224
            :.|.:|||||:|.|||||...|:        .:..:.|::.:::::.:..|..||..|.||...|
  Fly    37 INIHLVPHSHDDVGWLKTVDQYYYGHRNNIQHAGVQYIIDTVISELIKNPDRRFIQVETSFFSKW 101

  Fly   225 WDQAHPTKQRALKRLIDAGRIEITTGGWVMTDEANVHIYPMLDQLIEGHQWLKNNLNV--TPKVG 287
            |::...|.:..:|.|::.||::...|.|.|.|||.|:...::||...|.::|.:...|  .|:||
  Fly   102 WNEQSETMRAVVKMLVNEGRLQFINGAWSMNDEAAVNYQSVIDQFTVGLKFLDDTFGVCGRPRVG 166

  Fly   288 WSIDPFGHGSTVPYLLSGANFEGTIIQRIHYAWKQWFARQQSGDFIWKP---------------- 336
            |.||||||......:.:...|:|....|:.:..|.......:.:.||..                
  Fly   167 WQIDPFGHSREQASIYAQMGFDGEFFSRMDHNDKGRRMNDLALEMIWDASESLSQVKLFTGLLYT 231

  Fly   337 -YWRSRKDKDSEAGSLLTHNMPFDIYSIKGSCGPHPFICLNFDFRKIPGEYTEYSVKAQFITDDN 400
             ||.             |....||::     |...|.|           :...|        |:|
  Fly   232 FYWD-------------TPGFCFDVH-----CSDDPII-----------DSDSY--------DNN 259

  Fly   401 LESKAQLLLEQYARTASLFPHNVALIPVGDDFRYNKDREVDQQYQNYKKLIDHIMANRR-----L 460
            ::|:....:...|:.|..|..|..:||:|.||:| :|.||:  |:|..|||.::  |.|     .
  Fly   260 VKSRVDDFIAYAAQVAEKFRTNHIMIPMGGDFQY-EDAEVN--YKNMDKLIKYV--NERQSSGSK 319

  Fly   461 YNADIRFGTPSDYFEAIKERMKDHTPGFPTFKGDFFVY-SDIFSEGRPAYWSGYFTTRPFYKLLS 524
            ||  |.:.||:.|..::.:.::    .:|....|||.| ||..|     :|:||:|:||..|...
  Fly   320 YN--IIYSTPTCYLNSVHKSVQ----SYPNKTLDFFPYGSDTNS-----FWTGYYTSRPTQKRFE 373

  Fly   525 SELEHQLRSAEIVFTLAYNTARQAKRENAIKIYEKNYELIINARRNLGLFQHHDAITGTSKAAVM 589
            .:..|.|:.|:.:...|..::.|.|.:            :...|..:|:.|||||||||.|..|.
  Fly   374 RDGNHILQVAKQLSAFAELSSTQQKED------------LEYLREIMGVMQHHDAITGTEKQHVS 426

  Fly   590 RDYAMRLFESTQNMVKMQ---------------ESCLELLLQKGQPRHHGFLLSEFERDNFNKLP 639
            .||...|:::....||..               ||||:|.:.:          ..|.:|      
  Fly   427 DDYDRILYDAIVGGVKTAGDALRKLTNLPNGEFESCLQLNISE----------CAFTKD------ 475

  Fly   640 RKMPIQMANGDESTPTVPAGEGGAGGSSSSGSVGSFVLYNSLAQKRLEVVTLRVQHPNVKIVNDK 704
                    ..|....|                     |||:||....:.|.:.|::.|.::.::|
  Fly   476 --------GADNVVVT---------------------LYNALAHTTKQYVRVPVKNENYQVTDEK 511

  Fly   705 GVELNHIQINPVWNITDTYEQGLGTSVSGTVGRIRTSTRQFEVMFVAELEPLSLSTYRVQVDEVN 769
            | .:...:|.||             .........|.|..|.|::|.|.::.:: :.|..:||...
  Fly   512 G-RVVASEIVPV-------------PAEVLALEFRDSDTQHELVFKASVDKIA-NYYIKKVDSKE 561

  Fly   770 FKRNIATIYCDDCTESQPASVSPPEEIESSPTSVFEARGKPAGDIQLENPHMRLLFDEKSGFLKT 834
            ....:..|       |||.:.:  |..:...|.|             :...::|:.|.|:|.||.
  Fly   562 SSNGVRVI-------SQPKANA--ETYDDEETIV-------------QTSLIKLVLDNKTGLLKR 604

  Fly   835 ITRKNQKKELLKPLQCNIKFAAYRSAQFHSGAYLFKTDPEQSEAEKEVLEGYTDMRIIITSGPIA 899
            :......:.:.:      .:..||:  :.||||:|:   :.::.:..:.|  ..:...:..|.:.
  Fly   605 VEMNGVSENIEQ------SYGLYRT--YDSGAYVFR---QYNQGDFVIQE--DGVEFTVYDGALV 656

  Fly   900 SDVTVIYGPFLAHTVRIFNTRTHLDAAIYVENDIDFEPPPKNRE--TELFMRFVTNIDNIAQAPM 962
            .:|...:..:::..:||...:.      |||.:....|.|...|  ||:...|.:.|.:..    
  Fly   657 KEVHQRFSEYISQVIRISEDKP------YVEFEWLVGPIPVEEEFGTEVVTIFSSEIASNG---- 711

  Fly   963 QRDPLKEPVDAATMPELPVFYSDQNGFQYHERIK------VPAIGIE---GNYFPITSGAFIQDS 1018
                              |||:|.||.:...|.|      .|.:.::   |||:||||...:|||
  Fly   712 ------------------VFYTDSNGRELIRREKDKREDFTPELAVQPTSGNYYPITSRIALQDS 758

  Fly  1019 RLRLTLLTTHAQGAASYEPGQLEVMLDRRTLYDDYRGMGEGVVDSR-----LTRHKFWLLVEDLP 1078
            ..||.:|...|||..|.:.||:|:||.||.:.||..|:||.:.:.:     :.|.|.:|::....
  Fly   759 NKRLAILNDRAQGGTSMKDGQIELMLHRRLVRDDGYGVGEALNEEKYGQPLIARGKVFLILNAAD 823

  Fly  1079 GGQHVTQPPSYKVLSQQAQQLA-NALRYPPNLYFVSNLEQPELAAALLPLVRLLPKGPLPCDVHL 1142
            .             |..|::.| .....|...:|..|......||..:|.....||     .|||
  Fly   824 E-------------STSAEREAEKEFHLPLWKFFSKNTGSTTAAAKSVPSFDDFPK-----SVHL 870

  Fly  1143 TTLRTLSDPELQL----FPSASALLVLHRQGFDCSVSAG-----------RELSMEAICPLSSKG 1192
            .||...:|.|:.|    |..       |.:|...|.:..           ||.:::...|||   
  Fly   871 LTLEPFNDDEILLRVENFKD-------HIEGKVVSFNIRPIFDYLNGVEIRETTLDGNLPLS--- 925

  Fly  1193 LGNVQLGRLSLHTIEATSLTGTEQKSSRESY------HIRSLAE--ISLEPMELRTF 1241
                .:.:...|. |.:.:.|:|.:....|:      ..:..||  ::|.||::|||
  Fly   926 ----DMKQFKFHA-EGSGIRGSEPEYYTSSHKPLSANQTQDAAEFAVTLYPMQIRTF 977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IIbNP_001262614.1 PLN02701 148..1246 CDD:178304 280/1162 (24%)
GH38N_AMII_GMII_SfManIII_like 167..514 CDD:212120 103/378 (27%)
Alpha-mann_mid 508..596 CDD:286360 28/87 (32%)
Glyco_hydro_38C 813..1241 CDD:285047 108/467 (23%)
LManVNP_001285763.1 GH38N_AMII_LAM_like 37..311 CDD:212121 85/315 (27%)
Alpha-mann_mid 358..433 CDD:286360 28/86 (33%)
Glyco_hydro_38C 481..977 CDD:285047 138/627 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450135
Domainoid 1 1.000 50 1.000 Domainoid score I680
eggNOG 1 0.900 - - E1_KOG1959
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 49 1.000 Inparanoid score I462
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.790

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