DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-IIb and LManIII

DIOPT Version :10

Sequence 1:NP_650494.2 Gene:alpha-Man-IIb / 41913 FlyBaseID:FBgn0026616 Length:1249 Species:Drosophila melanogaster
Sequence 2:NP_609250.2 Gene:LManIII / 34203 FlyBaseID:FBgn0032066 Length:1003 Species:Drosophila melanogaster


Alignment Length:1159 Identity:279/1159 - (24%)
Similarity:461/1159 - (39%) Gaps:282/1159 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 LKIIVVPHSHNDPGWLKTFTNYFQSDS--------RQILNLLVTKMQEYTDMTFIWSEISFLQLW 224
            :.|.:|||||:|.|||||...|:..:.        :.|.:.:|.::.:.:...||..|..|...|
  Fly    37 INIHLVPHSHDDLGWLKTVDQYYYGNKHNIQHAGVQYIFDTVVAELSKDSRRRFIQVETGFFAKW 101

  Fly   225 WDQAHPTKQRALKRLIDAGRIEITTGGWVMTDEANVHIYPMLDQLIEGHQWLKNNLNV--TPKVG 287
            |:....||::.:|.|::.||:|.|.|.|.|.|||.|:...::||...|.::|.:|..|  .|:||
  Fly   102 WEDQSETKKKLVKTLVNEGRLEFTGGAWSMNDEAAVNYQSVIDQFAVGLKFLNDNFGVCGRPRVG 166

  Fly   288 WSIDPFGHGSTVPYLLSGANFEGTIIQRIHYAWKQWFARQQSGD-----------FIWKPYWRSR 341
            |.||.|||......:.:...|:|           |:|||....|           .:|... .:.
  Fly   167 WQIDAFGHSREQASMFAQMAFDG-----------QFFARMDQNDKNKRVDNLGLEMVWDAS-ETL 219

  Fly   342 KDKDSEAGSLLTHNMPFDIYSI-KGSCGPHPFICLNFDFRKIPGEYTEYSVKAQFITDDNLESKA 405
            ::.|...|.|..|      ||. .|.|    |..|..|...|.|:  .|        |:|::|:.
  Fly   220 EEMDFFTGMLYNH------YSAPPGFC----FDSLCQDDPIIDGK--SY--------DNNVKSRV 264

  Fly   406 QLLLEQYARTASLFPHNVALIPVGDDFRYNKDREVDQQYQNYK---KLIDHI---MANRRLYNAD 464
            ...|...:..|..:..|..::|:||||:|      :..|.|||   |||.::   .|:...||  
  Fly   265 DDFLNYASNLAGYYRSNHIMVPMGDDFQY------ENAYMNYKNMDKLIKYVNERQASGSKYN-- 321

  Fly   465 IRFGTPSDYFEAIKERMKDHTPGFPTFKGDFFVYSDIFSEGRPAYWSGYFTTRPFYKLLSSELEH 529
            |.:.|...|..::.:.::    .||....||..:|   .|.: ::|:|:||:||..|....:..|
  Fly   322 IFYSTAGCYLNSLHKSLQ----SFPNKTQDFLPHS---HEAK-SFWTGFFTSRPTQKRFERDGNH 378

  Fly   530 QLRSAEIVFTLAYNTARQAKRENAIKIYEKNYELIINARRNLGLFQHHDAITGTSKAAVMRDYAM 594
            .|:.|:.:..||..:.            |:.::.:...|:.:.:.|||||||||.|..|..||..
  Fly   379 ILQVAKQLSVLADLSG------------EEQHKDLDYLRQIMAVMQHHDAITGTEKQEVSNDYDR 431

  Fly   595 RLFESTQNMVKMQESCLELLLQKGQPRHHGFLLSEFERDNFNKLPRKMPIQMANGDESTPTVPAG 659
            .|:::...........|.:|..:........|........|.|         .|.|:...|    
  Fly   432 LLYDAILGGANTARDALRVLTNQPNGEFQSCLKLNISECAFTK---------ENADDFMVT---- 483

  Fly   660 EGGAGGSSSSGSVGSFVLYNSLAQKRLEVVTLRVQHPNVKIVNDKGVELNHIQINPV-WNITDTY 723
                             |||.||....:.|.:.|:..:.::.::|| .|...::.|| |.:... 
  Fly   484 -----------------LYNPLAHTSTQYVRVPVKEDSYQVTDEKG-GLVASELVPVPWEVLSL- 529

  Fly   724 EQGLGTSVSGTVGRIRTSTRQFEVMFVAELEPLSLSTYRV-QVD---EVNFKRNIATIYCDDCTE 784
                         ..|.:..|.|::|.|.:.  .::||.: ::|   ||:...|..|   :....
  Fly   530 -------------EFRNNDTQHELVFKASVN--KIATYFIKKIDKTTEVDITVNTQT---EQSVN 576

  Fly   785 SQPASVSPPEEIESSPTSVFEARGKPAGDIQLENPHMRLLFDEKSGFLKTITRKNQKKELLKPLQ 849
            .:.::|..|:..:...:...:.......:..::|..::|:.|..:|.|||:......:::     
  Fly   577 EEESNVKVPKRFKKVHSLKTDLETLDDQETIVQNSLIKLVIDNNTGRLKTVEMNGVSEDI----- 636

  Fly   850 CNIKFAAYRSAQFHSGAYLFKTDPEQSEAEKEVLEGYTDMRIIITSGPIASDVTVIYGPFLAHTV 914
             :..|..|::|:  |..|:|:.|     |:.|::|...|..:.  .|....:|......:::..:
  Fly   637 -DQTFGMYKTAR--SCHYIFRQD-----ADLELVEDAFDFTVY--DGESVKEVHQHVNEWISQVI 691

  Fly   915 RIFNTRTHLDAAIYVENDIDFE----PPPKNRE--TELFMRFVTNIDNIAQAPMQRDPLKEPVDA 973
            ||:..          .|.::||    |.|.:.|  .|:...|.:.|.:..               
  Fly   692 RIYEG----------VNRVEFEWLVGPVPIDDELGKEIVTIFKSGISSGG--------------- 731

  Fly   974 ATMPELPVFYSDQNGFQYHERIK------VPAIG---IEGNYFPITSGAFIQDSRLRLTLLTTHA 1029
                   |||:|.||.:...|.|      .|.:.   :.|||:|:||...:|||..|:.||...:
  Fly   732 -------VFYTDSNGREMMRREKDKREDFSPDLSEQPVSGNYYPVTSRMALQDSSKRMVLLNDRS 789

  Fly  1030 QGAASYEPGQLEVMLDRRTLYDDYRGMGEGVVDSR-----LTRHKFWLLVEDLPGGQHVTQP--- 1086
            ||.||.|.|:||:||.||.::.|..|..|.:.:.:     :.|.|.:|.:..:..|...::.   
  Fly   790 QGGASLEDGRLEMMLHRRHIFADGSGAAEAINEQQFGKGLIARGKLFLYLNAIEDGATASERVAE 854

  Fly  1087 -----PSYKVLSQQAQQLANALRYPPNLYFVSNLEQPELAAALLPLVRLLPKGPLPCDVHLTTLR 1146
                 |.:|..|:                  ||..|.::...|...      ..||..|||.||.
  Fly   855 KEIHLPFWKFFSK------------------SNNIQSDVTKTLSDF------NDLPQSVHLLTLE 895

  Fly  1147 TLSDPELQL-------FPSASALLVLHRQGFDCSVSAG----RELSMEAICPLSSKGLGNVQLGR 1200
            ..|..|:.|       ....:.:....||.||   ..|    ||.:::...|||       .:.|
  Fly   896 PYSKDEILLRLENFLDQTEGNVVSFSIRQIFD---DLGGLEIRETTLDGNLPLS-------DMKR 950

  Fly  1201 LSLHTIEATSLTGTEQKSSRESYHI---RSLA----------EISLEPMELRTF 1241
            |..|.      .|:....|...|..   :.||          .::|:||::|||
  Fly   951 LKFHH------DGSGPSHSVPEYFTSLHKPLAADKTQDASEFSVTLKPMQIRTF 998

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IIbNP_650494.2 PLN02701 148..1246 CDD:178304 279/1159 (24%)
LManIIINP_609250.2 PLN02701 20..820 CDD:178304 234/939 (25%)
GH38N_AMII_LAM_like 37..311 CDD:212121 92/311 (30%)

Return to query results.
Submit another query.