DRSC/TRiP Functional Genomics Resources

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Protein Alignment alpha-Man-IIb and aman-3

DIOPT Version :9

Sequence 1:NP_001262614.1 Gene:alpha-Man-IIb / 41913 FlyBaseID:FBgn0026616 Length:1249 Species:Drosophila melanogaster
Sequence 2:NP_001361919.1 Gene:aman-3 / 172178 WormBaseID:WBGene00018594 Length:1046 Species:Caenorhabditis elegans


Alignment Length:1167 Identity:315/1167 - (26%)
Similarity:514/1167 - (44%) Gaps:229/1167 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 IQSNTNITASEEHSKFDFQPEWMRSKEYWDRGFEE------RFD--------------AQKKDKQ 164
            ::...|::.|:::... |:|:    .|...|...|      .||              |.||.:.
 Worm    57 VKEANNLSNSQKNPNI-FEPK----NEVCQRPLTESSTNFNTFDLFESVVAKGNTLPPASKKSRT 116

  Fly   165 RPPLKIIVVPHSHNDPGWLKTFTNYFQSDSRQILNLLVTKMQEYTDMTFIWSEISFLQLWWDQAH 229
            . .||:.|:|.:|.|||||:||..|.:| :.|||:.:...|.:...|.|:|:|..|.:.||...:
 Worm   117 E-KLKVYVLPFTHVDPGWLETFERYTKS-TNQILDNMHQFMMKNEKMRFMWAEFVFFERWWSLQN 179

  Fly   230 PTKQRALKRLIDAGRIEITTGGWVMTDEANVHIYPMLDQLIEGHQWLKNNLNVTPKVGWSIDPFG 294
            ...:..:|:|:..||:|:.||.||||||||.:....:|.::||.|::..|..:.|:..||.||||
 Worm   180 EQVKEDVKKLVTEGRLELATGSWVMTDEANPYFPVSVDNIVEGFQFIHKNFGIKPQTMWSNDPFG 244

  Fly   295 HGSTVPYLLSGANFEGTIIQRIHYAWKQWFARQQSGDFIWKPYWRSRKDKDSEAGSLLTHNMPFD 359
            :.::||||...:....|:|.|||:..||....|::..|.|:.|:.:..:.|     :||..:|:.
 Worm   245 YSNSVPYLFKKSGVHRTVINRIHHKLKQTLQSQKAIPFKWRQYFDATGEDD-----VLTQILPYT 304

  Fly   360 IYSIKGSCGPHPFICLNFDFRKIPGEYTEYSV---KAQFITDDNLESKAQLLLEQYARTASLFPH 421
            .|.|..|||....:|..|||:::    |.:|.   |.:.||:.|:.:||:.|:.|..:.:.::..
 Worm   305 HYDILNSCGSDASVCCEFDFKRM----THWSCPGPKPEKITNANVAAKAEKLVNQLEKMSEMYKA 365

  Fly   422 NVALIPVGDDFRYNKDREVDQQYQNYKKLIDHIMANRRLYNADIRFGTPSDYFEAIKE---RMKD 483
            .|.|:..|||||::...|.:||:.|:..:.|.|....|:   :|||||.:|||..:::   ..||
 Worm   366 PVILMMHGDDFRFDMIEEWNQQHDNFIPVFDEINKGSRV---EIRFGTFTDYFNDLEKWYSNNKD 427

  Fly   484 HTPGFPTFKGDFFVYSDIFSEGRPAYWSGYFTTRPFYKLLSSELEHQLRSAEIVFTLAYNTARQA 548
            ..|  ||..||||.|.....:    ||:||:|||||:|.....|...:|:.:|:.::.....:|.
 Worm   428 SEP--PTVSGDFFPYMCALGD----YWTGYYTTRPFFKRQGRLLHSLIRNGDIMLSMLRVNLKQR 486

  Fly   549 KRENAIKIYEKNYELIINARRNLGLFQHHDAITGTSKAAVMRDYAMRLFESTQNMVKMQESCLEL 613
            |....:|..|.       |||||.|||||||||||||.:||.:|:                  ||
 Worm   487 KIGENVKRLEA-------ARRNLALFQHHDAITGTSKVSVMDNYS------------------EL 526

  Fly   614 LLQKGQPRHHGFLLSEFERDNFNKLPRKMPIQMANGDESTPTVPAGEGGAGGSSSSGSVGSFVLY 678
            |       |...:.:....:|..|....:..::.:|.|....|..       .||...:.   ::
 Worm   527 L-------HASIVSTNIVLENLTKSDIDLYPRIHDGIELQTIVDL-------ESSEKEIR---IF 574

  Fly   679 NSLAQKRLEVVTLRVQHPNVKIVNDKGVELNHIQINPVWNITDTYEQGLGTSVSGTVGRIRTSTR 743
            ||...:..:|..:||:...| ||:..| ::...|:.|.:.                  :.:....
 Worm   575 NSHLFEITDVFKIRVKEREV-IVSIDG-KIIEAQLEPFFQ------------------KSKVEKD 619

  Fly   744 QFEVMFVAELEPLSLSTYRVQVDEVNFKRNIATIYCDDCTESQPASVSPPEEIESSPTSVFEARG 808
            .|.::|.|.:.|||:...:||..:......:|.|...|.......|........|:|        
 Worm   620 SFLLLFQATVLPLSMMKVKVQRGDSGGLTKMAKIEAKDTNAWDLGSSWTIASSTSAP-------- 676

  Fly   809 KPAGDIQLENPHMRLLFDEKSGFLKTITRKNQKKELLKPLQCNIKFAAYRSAQFHSGAYLFK--T 871
                  .||.|:.::..|..:|.::::.:.:...:    ..|...|..|:.|  ..||||.:  |
 Worm   677 ------NLETPYFKVSNDPITGAIQSVNKLSDNSK----FHCQQSFYNYKEA--GGGAYLMRLHT 729

  Fly   872 DPEQSEAEKEVLEGYTDMRIIITSGPIASDVTVIY--GPFLAHTVRIFNTRTHLDAAIYVENDID 934
            :|      ||::| |..:::   |||:...   ||  ...:...:.|.|........:.:...||
 Worm   730 NP------KEIIE-YQWLKV---SGPLRQS---IYQKSTNVLQRLSIHNVEGPSGEEVDISMSID 781

  Fly   935 FEPPPKNRETELFMRFVTNIDNIAQAPMQRDPLKEPVDAATMPELPVFYSDQNGFQYHER--IKV 997
            .   .|.|.|||..||.|..|.                       |:.|:|..|.|...|  .|:
 Worm   782 I---TKERNTELMTRFSTKWDK-----------------------PLTYTDSVGMQLLRRDFYKL 820

  Fly   998 PAIGIEGNYFPITSGAFIQDSRLRLTLLTTHAQGAASYEPGQLEVMLDRRTLYDDYRGMGEG--- 1059
            |   ::.||:|:.:.|.:|..:.||::::....||...|.|.:|:.:||....||.:|:|.|   
 Worm   821 P---VQSNYYPMPTAAVLQSGKQRLSIVSNVEHGARFLESGTVEINIDRILNQDDGKGLGTGPDA 882

  Fly  1060 -VVDSRLTRHKFWLLVEDLPGGQHVTQPPSYKVLSQQAQQLANALRYPPNLYFVSNLEQPELAAA 1123
             .:|.:....||.|:.:.|....  |:...|...|.:|||....:.|||.::     .:|.....
 Worm   883 IPIDMKPVDMKFKLIFDSLESDP--TENSRYSTHSFRAQQAVQTIIYPPMMF-----NRPPKKEE 940

  Fly  1124 LLPLVRLLPKGPLPCDVHLTTLRTLSDPELQLFPSASALLVLHRQGFDCSV----SAGRELS--- 1181
            .:..:..:.....|||:.|.|:|.|.|.:        .||:|:|....||.    :.|.||.   
 Worm   941 DIEEIEEISNLKFPCDIQLLTVRPLEDNK--------QLLILYRHATVCSSQKVGNCGGELKSSL 997

  Fly  1182 MEAICPLSSKGLGNVQLGRLSLHTIEATSLTGTEQKSSRESYHIRSLAEISLEP-MELRTFN 1242
            |:.:..|.:|             .::.|.|:|..:        :..:.::...| .||:||:
 Worm   998 MDLLIKLGAK-------------QVQKTDLSGVTR--------VGGIIKVEYLPDYELKTFD 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IIbNP_001262614.1 PLN02701 148..1246 CDD:178304 310/1139 (27%)
GH38N_AMII_GMII_SfManIII_like 167..514 CDD:212120 125/352 (36%)
Alpha-mann_mid 508..596 CDD:286360 38/87 (44%)
Glyco_hydro_38C 813..1241 CDD:285047 105/445 (24%)
aman-3NP_001361919.1 PLN02701 117..978 CDD:178304 287/1019 (28%)
GH38N_AMII_GMII_SfManIII_like 118..452 CDD:212120 125/352 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1959
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1101882at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11607
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

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