DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-IIb and Man2b1

DIOPT Version :9

Sequence 1:NP_001262614.1 Gene:alpha-Man-IIb / 41913 FlyBaseID:FBgn0026616 Length:1249 Species:Drosophila melanogaster
Sequence 2:XP_006530810.1 Gene:Man2b1 / 17159 MGIID:107286 Length:1024 Species:Mus musculus


Alignment Length:1195 Identity:282/1195 - (23%)
Similarity:472/1195 - (39%) Gaps:351/1195 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 KQRPP-----LKIIVVPHSHNDPGWLKTFTNYF-------------------QSDSRQILNLLVT 203
            |..||     |.:.::||:|:|.|||||...|:                   .:..:.||:.:|:
Mouse    53 KTCPPTKPGMLNVHLLPHTHDDVGWLKTVDQYYYGMDLDFLNFMPTVLSDVQHASVQYILDSVVS 117

  Fly   204 KMQEYTDMTFIWSEISFLQLWWDQAHPTKQRALKRLIDAGRIEITTGGWVMTDEANVHIYPMLDQ 268
            .:.|.....||:.|::|...||.|.....|.|::.|:..||:|...|||||.|||..|...::||
Mouse   118 SLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNLVRQGRLEFVNGGWVMNDEAATHYGAIVDQ 182

  Fly   269 LIEGHQWLKNNL--NVTPKVGWSIDPFGHGSTVPYLLSGANFEGTIIQRIHYAWKQWFARQQSGD 331
            :..|.::|::..  :..|:|.|.||||||......|.:...|:|..:.||.|..|    ..:...
Mouse   183 MTLGLRFLQDTFGSDGLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRIDYQDK----LNRKKK 243

  Fly   332 FIWKPYWRSRKDKDSEAGSLLTHNMPFDIYSIKGSCGPHPFICLNFDFRKIPGEYTEYSVKAQFI 396
            ...:..||:....:..|..|.|..:|       .:..|..::|.:.                 ..
Mouse   244 LRMEELWRASDSLEPPAADLFTGVLP-------NNYNPPKYLCWDV-----------------LC 284

  Fly   397 TD----DNLES---KAQLLLEQYARTAS----LFPHNVALIPVGDDFRYNKDREVDQQYQNYKKL 450
            ||    ||..|   .|:.|:..:.:.||    .:..|..::.:|.||.|   ...:..::|..||
Mouse   285 TDPPVVDNPRSPEFNAKTLVNYFLKLASSQKGFYRTNHTVMTMGSDFHY---ENANMWFKNMDKL 346

  Fly   451 IDHIMANRRLYNAD--------IRFGTPSDY-FEAIKERMKDHTPGFPTFKGDFFVYSDIFSEGR 506
            |       ||.||.        :.:.||:.| :|..|..:.     :...:.|||.|:|    |.
Mouse   347 I-------RLVNAQQVNGSLVHVLYSTPTCYLWELNKANLT-----WTVKEDDFFPYAD----GP 395

  Fly   507 PAYWSGYFTTRPFYKLLSSELEHQLRSAEIVFTLAYNTARQAKRENAIKIYEKNYELIINARRNL 571
            ..:|:|||::||..|...              .|:||..:...:          .|.::....|:
Mouse   396 HMFWTGYFSSRPALKRYE--------------RLSYNFLQVCNQ----------LEALVGPEANV 436

  Fly   572 G---------------LFQHHDAITGTSKAAVMRDYAMRLFESTQNMVKMQESCLELLLQKGQPR 621
            |               :.|||||::||::..|:.|||.:|...       ...| |:|:.....|
Mouse   437 GPYGSGDSAPLQEAMAVLQHHDAVSGTARQNVVNDYARQLAAG-------WGPC-EVLVSNALAR 493

  Fly   622 HHGFLLSEFERDNFNKLPRKMPIQMANGDESTPTVPAGEGGAGGSSSSGSVGSFVLYNSLAQKRL 686
                 ||.: :.||: ..|::.|.:.         |.        |.:.......|||.|.:|..
Mouse   494 -----LSHY-KQNFS-FCRELNISIC---------PV--------SQTSERFQVTLYNPLGRKVD 534

  Fly   687 EVVTLRVQHPN--VKIVNDKGVELNHIQINPVWNITDTYEQGLGTSVSGTVGRIRTSTRQFEVMF 749
            ::|.|.|...|  ||..:||.:..|.:.:...:  ::||                    |:|::|
Mouse   535 QMVRLPVYEGNFIVKDPHDKNISSNVVMVPSYY--SETY--------------------QWELLF 577

  Fly   750 VAELEPLSLSTYRV-QVDEVNFK-RNIATIYCDDCTESQPASVSPPEEIESSPTSVFEARGKPAG 812
            .|.:..|..|||.| ::.::|.: .|:               :|.|.:.:|....|         
Mouse   578 PASVPALGFSTYSVAKMSDLNHQAHNL---------------LSRPRKHKSHHVLV--------- 618

  Fly   813 DIQLENPHMRLLFDEKSGFLKTITRKNQKKELLKPLQ-----CNIKFAAYRSAQFHSGAYLFKTD 872
               :||.:||..||..:|.|..|  :|.::.|..|:.     .|.......|:| .||||:|:.:
Mouse   619 ---IENKYMRATFDSGTGLLMKI--ENLEQNLSLPVSQGFFWYNASVGDEESSQ-ASGAYIFRPN 677

  Fly   873 PEQSEAEKEV-LEGYTDMRIIITSGPIASDVTVIYGPFLAHTVRIFNTRTHLDAAIYVENDIDFE 936
                 ..|.: :..:..:.::.|:  :..:|...:..:.:..:|::..:.||:    :|..:...
Mouse   678 -----VGKPIPVSRWAQISLVKTA--LVQEVHQNFSAWCSQVIRLYKGQRHLE----LEWTVGPI 731

  Fly   937 PPPKNRETELFMRFVTNIDNIAQAPMQRDPLKEPVDAATMPELPVFYSDQNGFQYHER------- 994
            |...:...|:..||.|.:....|                      |::|.||.:..:|       
Mouse   732 PVRDDWGKEVISRFDTPMKTKGQ----------------------FFTDSNGREILKRRDDYRPT 774

  Fly   995 ----IKVPAIGIEGNYFPITSGAFIQDSRLRLTLLTTHAQGAASYEPGQLEVMLDRRTLYDDYRG 1055
                ...|   :.|||:|:.:..:|.|.:::||:||..:||.:|.:.|.||:|:.||.|.||.||
Mouse   775 WTLNQTEP---VAGNYYPVNTRIYITDGQMQLTVLTDRSQGGSSLQDGSLELMVHRRLLVDDDRG 836

  Fly  1056 MGEGVVDSRLTRHKFWLLVEDLPGGQHVTQPPS-------YKVLSQQ---AQQLANAL------- 1103
            :.|.::::.         ..|...|:|:....|       :::|::|   |.|:..:|       
Mouse   837 VSEPLLETD---------TGDKVRGRHLVLLSSVSDAAARHRLLAEQEVLAPQVVLSLGGSSPYH 892

  Fly  1104 -RYPPNLYFVSNLEQPELAAALLPLVRLLPKGPLPCDVHLTTLRTLSDPELQLFPSASALLVLHR 1167
             |..|...| |.|.|                 .||..|||.||.......|        ||.|..
Mouse   893 SRATPKTQF-SGLRQ-----------------ELPPQVHLLTLARWGPKML--------LLRLEH 931

  Fly  1168 QGFDCSVSAGRELSMEAICPLSSKGLGNVQ--LGRLSLHTIEATSLTGTE--QKSSR-------- 1220
            | |.....:.|.||    .|::.    |||  ....:::.::.|:|...:  .::||        
Mouse   932 Q-FALKEDSDRNLS----SPVTL----NVQNLFQTFTINYLQETTLAANQPLSRASRLKWMTNTG 987

  Fly  1221 -ESYHIRSLAE---ISLEPMELRTF 1241
             .||...|..:   ::|:|||:|||
Mouse   988 PTSYPEPSKLDPTSVTLKPMEIRTF 1012

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IIbNP_001262614.1 PLN02701 148..1246 CDD:178304 282/1195 (24%)
GH38N_AMII_GMII_SfManIII_like 167..514 CDD:212120 101/392 (26%)
Alpha-mann_mid 508..596 CDD:286360 24/102 (24%)
Glyco_hydro_38C 813..1241 CDD:285047 111/478 (23%)
Man2b1XP_006530810.1 PLN02701 63..917 CDD:178304 250/1071 (23%)
GH38N_AMII_LAM_like 63..352 CDD:212121 85/326 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1959
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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