DRSC/TRiP Functional Genomics Resources

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Protein Alignment AOX1 and gad-3

DIOPT Version :9

Sequence 1:NP_650475.1 Gene:AOX1 / 41894 FlyBaseID:FBgn0267408 Length:1273 Species:Drosophila melanogaster
Sequence 2:NP_001294662.1 Gene:gad-3 / 24104108 WormBaseID:WBGene00015057 Length:1257 Species:Caenorhabditis elegans


Alignment Length:1381 Identity:389/1381 - (28%)
Similarity:607/1381 - (43%) Gaps:262/1381 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ITINGTSHEVNLSALPADISLNTFIREYAGLTGTKFMCQEGGCGVCVCTLTGIHPETGELRTW-- 67
            |..|....:||...:..:::|..::|...||.|||..|:||.||.|          |..|.||  
 Worm     6 IFFNVNGKDVNEENVDPELTLAYYLRNKLGLRGTKLGCEEGVCGSC----------TVVLGTWDD 60

  Fly    68 --------AVNSCLTLLNTCLGLEVTTSEGLGNKRVGYHAIQQRLAKMNGTQCGYCSPGIVMNMY 124
                    |||:||..|.......|.|.||:|: |...|.||.|:|:.:..|||:||||.||:.|
 Worm    61 CQNKAVYRAVNACLVPLFHVHKTFVITVEGVGS-RDKIHPIQDRMARGHALQCGFCSPGFVMSAY 124

  Fly   125 GLLKSKGGKVTMEEVENSFGGNICRCTGYRPILDAMKSFAVDSNIQVPAECIDIEDLSTKKCPKT 189
            .|..::... |::::..:...|:||||||||||:|:.||:.:|.                .|...
 Worm   125 ALFSNQPNP-TIQQINAAIRANLCRCTGYRPILEALYSFSSESG----------------GCCGG 172

  Fly   190 GQTCSGSCK----------------------KQQPKGSQLYPDGSR----WSWPVSL-GDLFAAL 227
            .:|..|.||                      |..|....::|...|    ...||:| ||....|
 Worm   173 NKTGGGCCKDKSSSDEDGGYDEKLLSFNDFPKYDPTQEIIFPPSLRVFSDSETPVTLKGDRIELL 237

  Fly   228 ------QGAVKEKLPYMLVAGNTAHGVYRRSPDIKAF----IDVSGLAELKGHKLSADNSSLTLG 282
                  |....:|...::.:|.....|..|:|  |.|    |....:.|.  ::::.:..|:.:|
 Worm   238 LPKNIDQFKKFKKDRTVISSGLITRFVSTRNP--KEFSQKWISTKYVKEF--NEITVNKDSVVVG 298

  Fly   283 GNLSLSETME-LCRQLENTKGFEYLSQVWQHLD-WIANVPVRNAGTLAG---NLSIKHAHPEFPS 342
            ..|::.:..: |...|....|.|..|.:.:... .|||........::|   :||:        |
 Worm   299 AALNIQKMADTLTSSLSINIGKEIDSFIQKFSSPQIANFATWTGAIISGAKSSLSV--------S 355

  Fly   343 DVFIVLEALDAQVIVQEAVDKQQTVSLASYLGSSMEGKIIRGLVLRAYPKERFAFDSYKIMPRAQ 407
            |:.|:...|||::               :.|.:|  |::.:..:.....|:.||           
 Worm   356 DLLILFNVLDAKL---------------TLLNNS--GELTQVAIEEFAEKKLFA----------- 392

  Fly   408 NAHAYVNAAFL----------------------VEFTADAKVKSARICFG-GIHPE-----FVHA 444
             .|..|||.|.                      ..|.|....:.:||..| |..|:     .||.
 Worm   393 -THTIVNAIFSRSLTGFLFCLKLGETSEQDSTNFNFAALVGNQVSRIFVGLGGQPKRLTSLEVHI 456

  Fly   445 TAIENLIRDKNPFENGLVEKAFGQLSTLLQPDAVLPDASPVYRRKLACGLFYKFLLKIAAQRKQG 509
            .|::.|                 .:|.|.|    ..:.|.....|:|...|..|:     ..|: 
 Worm   457 DALKGL-----------------SVSDLCQ----TTEMSDYKNVKIALTRFSDFM-----NHKE- 494

  Fly   510 LGSRFVTGGSLL-----KRPVSSGQQSFETFQEHYPVTKATEKHEGLIQCSGEATYSNDLPTQHN 569
             .:..:.|.:.|     |...|:|:.....|.|.              ..:|||.|.||:.. :|
 Worm   495 -KTEEIEGINYLQYFKPKTNESAGRPIANYFNER--------------AITGEAFYVNDIQA-YN 543

  Fly   570 QLWAAFVIAKKVGAKVTKVDTQPALDLPGVVAYLDAKDIPGPNYVGPKIRDQFFFPKDEELFATG 634
            .:...||::....|::||:|...||.|.||..|....|:||.|..|.:| ....||.|..:||..
 Worm   544 AVHLGFVLSTVPHAEITKIDVSEALQLEGVAGYFGVSDVPGNNTPGLQI-SNMNFPDDTTIFADK 607

  Fly   635 EIKFYGQPVGIILANSNSLANRAAELVKLTYEGGAEEILPSL---------KAVLDKVGSEAGNN 690
            :::..||.:|:|.||...||.|||:|||:.|:.     ||||         |::|..|.....:.
 Worm   608 KVESVGQVIGVIAANDVVLARRAAKLVKVEYKE-----LPSLVNFKEAIEAKSLLGDVQHFGKDE 667

  Fly   691 KRLEQPIKSTIDVLQLEEPFDVSSSGQLDMGLQYHYYMEPQTTVVLPFEGG-LQVYAATQWMDLT 754
            ..:::.::::..||:          |:.|:|.|.|||:|.|:::|:|.||. |.|..:||....|
 Worm   668 NLVKESLENSSKVLE----------GECDIGGQEHYYLETQSSLVIPGEGDELIVNCSTQGTSFT 722

  Fly   755 QDTIANVLNLKSNDVQVKTRRIGGGYGGKATRCNLAAAAAALAAHKLNRPIRFVQSLESIMTSLG 819
            |..:|..:.:.::.:.|||:|:|||:|||....:..|...|:.|.|||||.....|....:...|
 Worm   723 QLMVAETMKIPAHKIIVKTKRLGGGFGGKVNNASWIACMCAIVAKKLNRPTYGFLSRADDLAITG 787

  Fly   820 KRWAFHCDYDFFVQKSGKISGIVSRFYEDAGYLANESPIGHTV---LLSKNCYEFSDNYKLDGYL 881
            ||...|..|...:...|||.||..:.:.:.|:..:.|. |.|:   |:..:.|... ..:.|||.
 Worm   788 KRHEVHAKYRVGINFDGKIEGIHYQAWLNGGWSKDHSE-GVTMVMGLMVDDVYNMG-TIRFDGYP 850

  Fly   882 VCTDSPSNTPCRAPGSVEGIAMMENIIEHIAFETGVDPADVRFANL--------LPAHKMGDMMP 938
            |.|:|.|||..|..|:.:...:.|.::..||.:.|....:::..|.        |......|.:.
 Worm   851 VKTNSNSNTALRGYGNPQSKLINEGVMRRIARDVGKSTEEIKRINFALEGGRRYLGGKIHNDALV 915

  Fly   939 RFLESTK----YRERKAEAIAHNKENRWHKRGLGLCIMEYQIGYFGQYPATVA--IYHSDGTVVV 997
            ...|..|    :..|::.....||.:...|||:.:..:.:.:.:.|.....:|  :.:.||:|.:
 Worm   916 ECWEYCKKWSEFENRQSGIKQFNKNSTAVKRGIAMSSVRFGLPHPGPTGHGIASLLINLDGSVQL 980

  Fly   998 SHGGIEMGQGMNTKISQVAAHTLGIPMEQVRIEASDTINGANSMVTGGAVGSETLCFAVRKACET 1062
            |.||.|||||:|.|:.||.:..|..|::.:.|....|....|:..|||:..::|...||...|:.
 Worm   981 SIGGTEMGQGLNQKMLQVCSEALKRPIDTITIVDCSTDKVTNAPETGGSQNADTNGLAVLACCKK 1045

  Fly  1063 LNERLKPVREEVKPENWQDLIQEAYNRKINLIASDQCKQ-----------GDMD-PYSVCGLCLT 1115
            :..||:|:.::...| |:..|:|||...:.|    ||.:           |:|: ||:..|.|..
 Worm  1046 IMSRLQPIIDKNDGE-WEKSIREAYGAYVPL----QCTEYGTVERAKFGVGEMESPYNTTGACAV 1105

  Fly  1116 EVELDVLTGNYIVGRVDILEDTGESLNPNVDIGQIEGAFMMGLGYWTSEQVIADPKTGECLTNRT 1180
            |:|:|.|||...|.||||:.|.||||||.:|||||||||:.|.|..|.|::..:..||:...|..
 Worm  1106 EMEIDTLTGYNRVIRVDIVMDVGESLNPALDIGQIEGAFIQGYGLVTCEKITFNKTTGQLDQNTA 1170

  Fly  1181 WTYKPPGAKDIPTDLRIELLP-KSPNKAGFMRSKATGEPAICLSI-AVAFALQQALQSARDDAGV 1243
            ..||.|.|.|:|.|.|::||. .:.|.|....||..|||.:.:|. ||..::...:.:.|::.|:
 Worm  1171 GKYKIPKASDVPKDFRVKLLGINNANGAQVYSSKGIGEPPLMMSCGAVHSSIMNCIDNWRNENGI 1235

  Fly  1244 PKSWVTLTAPMTPEHL 1259
             ..:|...:|::.|.:
 Worm  1236 -HEFVDTISPLSAEKI 1250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AOX1NP_650475.1 fer2 4..85 CDD:238126 27/89 (30%)
PLN02906 28..1259 CDD:215491 384/1356 (28%)
Fer2_2 86..159 CDD:280048 33/72 (46%)
FAD_binding_4 211..373 CDD:303082 37/181 (20%)
CO_deh_flav_C 399..502 CDD:281449 24/130 (18%)
Ald_Xan_dh_C 555..666 CDD:214971 44/110 (40%)
Ald_Xan_dh_C2 711..1192 CDD:280834 167/510 (33%)
gad-3NP_001294662.1 fer2 6..77 CDD:238126 26/80 (33%)
PLN02906 23..1255 CDD:215491 385/1364 (28%)
Fer2_2 87..158 CDD:280048 33/72 (46%)
FAD_binding_4 <277..385 CDD:303082 25/134 (19%)
Ald_Xan_dh_C 530..642 CDD:279635 45/118 (38%)
Ald_Xan_dh_C2 661..1182 CDD:280834 169/537 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163376
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4631
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D48717at2759
OrthoFinder 1 1.000 - - FOG0000201
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100184
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.650

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