DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5213 and AT5G53700

DIOPT Version :9

Sequence 1:NP_650473.1 Gene:CG5213 / 41892 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_200181.2 Gene:AT5G53700 / 835451 AraportID:AT5G53700 Length:251 Species:Arabidopsis thaliana


Alignment Length:88 Identity:20/88 - (22%)
Similarity:33/88 - (37%) Gaps:30/88 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 PQDMTESELH----RLFSKFGEIRKAKIIRHRRTGISCCY-----------GFVDYVSERQAAAA 98
            |..:::.:|.    :.||..||:....::.|   |..||:           |.||...|.....|
plant   132 PSTLSKIDLQIGLCKHFSSCGEVTGISVLVH---GNLCCHESKARVDIMGKGCVDKALELSGRTA 193

  Fly    99 VNGMDGYE--------TRGKRLK 113
                ||::        ..|::||
plant   194 ----DGWKIVVYFVVPPAGRKLK 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5213NP_650473.1 RRM1_Hu_like 41..117 CDD:240821 20/88 (23%)
RRM 128..202 CDD:214636
AT5G53700NP_200181.2 RRM_SF 22..100 CDD:302621
RRM_SF 123..200 CDD:302621 17/74 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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