DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5213 and SF2

DIOPT Version :9

Sequence 1:NP_650473.1 Gene:CG5213 / 41892 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001247139.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster


Alignment Length:115 Identity:35/115 - (30%)
Similarity:53/115 - (46%) Gaps:16/115 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 LYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMI 193
            :||||||..:..|.:::||..:|.:..|:|.    |.|....||::||..|||:.|....|.|..
  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLK----NRRGPPFAFVEFEDARDADDAVKARDGYDY 69

  Fly   194 EGASRPLTVKFVEREKKGSSSTSSGSQYKDKRKSS-------PPPYKRRE 236
            :|..  |.|:|   .:.|...:..|....|:.:..       .||.||.:
  Fly    70 DGYR--LRVEF---PRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQ 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5213NP_650473.1 RRM1_Hu_like 41..117 CDD:240821
RRM 128..202 CDD:214636 26/72 (36%)
SF2NP_001247139.1 RRM_SF 3..80 CDD:418427 28/79 (35%)
RRM2_SRSF1_like 115..188 CDD:410013 35/115 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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