DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5213 and Hnrnpa2b1

DIOPT Version :9

Sequence 1:NP_650473.1 Gene:CG5213 / 41892 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001361674.1 Gene:Hnrnpa2b1 / 53379 MGIID:104819 Length:353 Species:Mus musculus


Alignment Length:186 Identity:45/186 - (24%)
Similarity:83/186 - (44%) Gaps:16/186 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAV----NGMD 103
            |.:..|..:.||..|...:.::|::....::|...:..|..:|||.:.|..:..||:    :.:|
Mouse    23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSID 87

  Fly   104 GYETRGKRLKVAFARPSEYES----TSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFN 164
            |.....||   |.||....:.    |...|:||.:....:|..:|:.|..||.|..:.::..:.:
Mouse    88 GRVVEPKR---AVAR
EESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 149

  Fly   165 NRSRGVAFLQFELVRDAE-VAKYGMDRY-MIEGASRPLTVKFVEREKKGSSSTSSG 218
            .:.||..|:.|:   |.: |.|..:.:| .|.|.:..:......:|.:...|:.||
Mouse   150 GKKRGFGFVTFD---DHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSG 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5213NP_650473.1 RRM1_Hu_like 41..117 CDD:240821 19/77 (25%)
RRM 128..202 CDD:214636 19/75 (25%)
Hnrnpa2b1NP_001361674.1 Nuclear localization signal. /evidence=ECO:0000255 9..15
RRM1_hnRNPA2B1 19..99 CDD:410155 19/78 (24%)
RRM2_hnRNPA2B1 112..191 CDD:409995 19/81 (23%)
Disordered. /evidence=ECO:0000250|UniProtKB:P22626 193..353 3/10 (30%)
HnRNPA1 302..326 CDD:402981
Nuclear targeting sequence. /evidence=ECO:0000250 308..347
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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