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Protein Alignment CG5213 and tra2b
DIOPT Version :9
| Sequence 1: | NP_650473.1 |
Gene: | CG5213 / 41892 |
FlyBaseID: | FBgn0038345 |
Length: | 251 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_001006878.1 |
Gene: | tra2b / 448667 |
XenbaseID: | XB-GENE-5864557 |
Length: | 293 |
Species: | Xenopus tropicalis |
| Alignment Length: | 166 |
Identity: | 45/166 - (27%) |
| Similarity: | 66/166 - (39%) |
Gaps: | 49/166 - (29%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 129 LYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMI 193
|.|..|..|..|:.:||:|:.||.|.||:::..:.:.||||.:|:.||.|.||:.||...:...:
Frog 124 LGVFGLSLYTTERDLREVFSKYGPISDVSIVYDQQSRRSRGFSFVYFENVDDAKEAKERANGMEL 188
Fly 194 EG---------ASRPLTVK---FVEREKKGSSSTSS----------------------------- 217
:| ..||.|.. ::.|...|||....
Frog 189 DGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGGYDDREYYSRSYRGGGGGGG 253
Fly 218 ---GSQYKDK--RKSSPPPYKRRERTNDHHVSKRSR 248
|.|.:|: |:.||.||..| ..:....|||
Frog 254 GWRGGQDRDQFSRRRSPSPYYSR---GSYRSRSRSR 286
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| CG5213 | NP_650473.1 |
RRM1_Hu_like |
41..117 |
CDD:240821 |
|
| RRM |
128..202 |
CDD:214636 |
28/81 (35%) |
| tra2b | NP_001006878.1 |
RRM_SF |
113..201 |
CDD:388407 |
26/76 (34%) |
|
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
| Tool |
Simple Score |
Weighted Score |
Original Tool Information |
| BLAST Result |
Score |
Score Type |
Cluster ID |
| Compara |
0 | 0.000 |
Not matched by this tool. |
| Domainoid |
0 | 0.000 |
Not matched by this tool. |
| eggNOG |
0 | 0.000 |
Not matched by this tool. |
| Hieranoid |
0 | 0.000 |
Not matched by this tool. |
| Homologene |
0 | 0.000 |
Not matched by this tool. |
| Inparanoid |
0 | 0.000 |
Not matched by this tool. |
| OMA |
0 | 0.000 |
Not matched by this tool. |
| OrthoDB |
0 | 0.000 |
Not matched by this tool. |
| OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
| OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
| Panther |
0 | 0.000 |
Not matched by this tool. |
| Phylome |
1 |
0.910 |
- |
- |
|
|
| RoundUp |
0 | 0.000 |
Not matched by this tool. |
| SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
| SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
| TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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