DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5213 and Rb97D

DIOPT Version :9

Sequence 1:NP_650473.1 Gene:CG5213 / 41892 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster


Alignment Length:240 Identity:59/240 - (24%)
Similarity:99/240 - (41%) Gaps:45/240 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAA 98
            |.:||   .|.:..|....||..|...:.::|::....::|...|..|..:||:.|........|
  Fly    28 LEHLR---KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA 89

  Fly    99 VNG----MDGYETRGKRLKVAFARPSEYESTSSS-----LYVGNLPTYMDEKKVRELFATYGNIV 154
            ...    :||.....||   |..|| |.||..::     |:||.|....||:.:||.|..:||:|
  Fly    90 QENRPHIIDGKTVEAKR---ALPRP-ERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150

  Fly   155 DVNLLRHKFNNRSRGVAFLQFE--------LVR----------DAEVAKYGMDRYM------IEG 195
            .|.||..|...:.||.||::|:        :::          |.:.:.|.:|:..      :..
  Fly   151 SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLAN 215

  Fly   196 ASRPLTVKFVEREKKGSSSTSSGSQYKDKRKSSPP-----PYKRR 235
            |.:|...:..:::..|....:...|....|...||     ||:::
  Fly   216 AIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQ 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5213NP_650473.1 RRM1_Hu_like 41..117 CDD:240821 18/79 (23%)
RRM 128..202 CDD:214636 26/102 (25%)
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 18/79 (23%)
RRM2_hnRNPA_like 124..196 CDD:240774 22/71 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.010

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