Protein Alignment CG5213 and cocoon

DIOPT Version :9

• Sequence 1: NP_650473.1
• Gene: CG5213 / 41892
• FlyBaseID: FBgn0038345
• Length: 251
• Species: Drosophila melanogaster
• Sequence 2: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Alignment Length: 178
• Identity: 45/178 - (25%)
• Similarity: 81/178 - (45%)
• Gaps: 26/178 - (14%)

  Fly    34 LPNLRMKT----------NLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFV- 87
            |.|...||          :||:..|..:.||.:|...|..:|::.||:|.:..|:|.|..:|||
  Fly    90 LENSTAKTKRTEAHLRCFDLIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVR 154

  Fly    88 --DYVSERQAAAAVNGMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATY 150
              .|..:....:..:.:||   |...:||..:|....:. ...::||.....::...:||.|:.:
  Fly   155 FGSYDVQMHVLSKRHSIDG---RWCEVKVPASRGMGNQE-PGKVFVGRCTEDIEADDLREYFSKF 215

  Fly   151 GNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGM-DRYMIEGAS 197
            |.::|| .:...|    |..:|:.|   .|..|.:... ::::|:|.|
  Fly   216 GEVIDV-FIPKPF----RAFSFVTF---LDPYVPRVVCGEKHIIKGVS 255

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5213	NP_650473.1	RRM1_Hu_like	41..117	CDD:240821	24/88 (27%)
		RRM	128..202	CDD:214636	17/71 (24%)
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	23/78 (29%)
		RRM2_TDP43	193..262	CDD:240768	17/71 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439582
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930