Protein Alignment maca and Rbms1

DIOPT Version :10

• Sequence 1: NP_650473.1
• Gene: maca / 41892
• FlyBaseID: FBgn0038345
• Length: 251
• Species: Drosophila melanogaster
• Sequence 2: XP_006234296.1
• Gene: Rbms1 / 362138
• RGDID: 1307777
• Length: 421
• Species: Rattus norvegicus
• Alignment Length: 247
• Identity: 62/247 - (25%)
• Similarity: 102/247 - (41%)
• Gaps: 44/247 - (17%)

  Fly     8 VPTLCWGYAGI-RGMFQTGRPVDPPPPLP---------------NLRMKTNLILNYLPQDMTESE 56
            ||:.|.|...: :.......|:.||.|..               :...||||.:..||.:.|:.:
  Rat    15 VPSSCLGSIDLPQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQD 79

  Fly    57 LHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGMDGYETRGKRLKVAFARPSE 121
            |.:|...:|:|...|.|..:.|.....|||||:.|...|..||:.:     :...::...|:..|
  Rat    80 LVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL-----KASGVQAQMAKQQE 139

  Fly   122 YESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEV--- 183
            .:.|  :||:.|||..|||:::..:...:|.::...:||.. :..||||.|.:.|.....|.
  Rat   140 QDPT--NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGTSRGVGFARMESTEKCEAVIG 201

  Fly   184 ---AKYGMDRYMIEGASRPLTVKFVEREKKGSSSTSSGSQYKDKRKSSPPPY 232
               .|:......:...:.||..||.:           |.|   |::.:|..|
  Rat   202 HFNGKFIKTPPGVSAPTEPLLCKFAD-----------GGQ---KKRQNPNKY 239

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
maca	NP_650473.1	sex-lethal	<41..>210	CDD:273740	48/174 (28%)
Rbms1	XP_006234296.1	RRM1_MSSP1	57..142	CDD:409900	25/89 (28%)
		half-pint	<86..>376	CDD:130706	45/176 (26%)
		RRM2_MSSP1	143..227	CDD:409903	24/86 (28%)