DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5213 and hnrnpa0l

DIOPT Version :9

Sequence 1:NP_650473.1 Gene:CG5213 / 41892 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001268650.1 Gene:hnrnpa0l / 321899 ZFINID:ZDB-GENE-030131-618 Length:302 Species:Danio rerio


Alignment Length:142 Identity:35/142 - (24%)
Similarity:67/142 - (47%) Gaps:11/142 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNG----MD 103
            |.:..|....|:..|...|.::|::....::.::....|.|:|||.|.|..:|.||::.    :|
Zfish     8 LFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSARPHIVD 72

  Fly   104 GYETRGKRLKVAFARPS----EYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFN 164
            |   ....||.|.||..    |..:....::||.|...::::.:::.|:.:|.|....::..|..
Zfish    73 G---NNVDLKRAV
AREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDT 134

  Fly   165 NRSRGVAFLQFE 176
            .:.||..|:.|:
Zfish   135 GKKRGFGFVYFD 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5213NP_650473.1 RRM1_Hu_like 41..117 CDD:240821 21/77 (27%)
RRM 128..202 CDD:214636 11/49 (22%)
hnrnpa0lNP_001268650.1 RRM1_hnRNPA0 4..82 CDD:240772 20/76 (26%)
RRM_SF 98..177 CDD:302621 11/49 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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