Protein Alignment maca and Pabpc6

DIOPT Version :10

• Sequence 1: NP_650473.1
• Gene: maca / 41892
• FlyBaseID: FBgn0038345
• Length: 251
• Species: Drosophila melanogaster
• Sequence 2: NP_001099678.1
• Gene: Pabpc6 / 292295
• RGDID: 1311201
• Length: 643
• Species: Rattus norvegicus
• Alignment Length: 256
• Identity: 65/256 - (25%)
• Similarity: 108/256 - (42%)
• Gaps: 50/256 - (19%)

  Fly    18 IRGMFQTGRPV---------DPPPPLPNLRMK--TNLILNYLPQDMTESELHRLFSKFGEIRKAK 71
            :.|||...|.|         |....| ..|.|  ||:.:..|.:||.:..|..|||:||.....|
  Rat   158 MNGMFLNDRKVFVGRFKSRRDRQAEL-GARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVK 221

  Fly    72 IIRHRRTGISCCYGFVDYVSERQAAAAVNGMDGYETRGKRLKVAFARPSEYEST----------- 125
            ::.. .:|.|..:|||.:.....|..||:.|:|.:..||::.|..|:......|
  Rat   222 VMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQ 285

  Fly   126 -----------------SSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFL 173
                             ..:|||.||...:|::::|:.|:.:|.|....:...  ..||:|..|:
  Rat   286 DKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFV 348

  Fly   174 QFELVRDAEVAKYGMDRYMIEGASRPLTVKFVEREKKGSSSTSSGSQYKDKRKSS---PPP 231
            .|....:|..|...|:..::  |::||.|...:|:::..:..|  :||..:..|:   |.|
  Rat   349 CFSSPEEATKAVTEMNGRIV--ATKPLYVALAQRKEERQAHLS--NQYMQRMASTSAVPNP 405

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
maca	NP_650473.1	sex-lethal	<41..>210	CDD:273740	50/196 (26%)
Pabpc6	NP_001099678.1	PABP-1234	11..622	CDD:130689	65/256 (25%)