DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment obe and snrnp200

DIOPT Version :9

Sequence 1:NP_650472.2 Gene:obe / 41891 FlyBaseID:FBgn0038344 Length:2183 Species:Drosophila melanogaster
Sequence 2:NP_001116729.1 Gene:snrnp200 / 799690 ZFINID:ZDB-GENE-081105-64 Length:2134 Species:Danio rerio


Alignment Length:1964 Identity:790/1964 - (40%)
Similarity:1197/1964 - (60%) Gaps:133/1964 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   232 ISAKLDDEHLIIRVGDILGSQRSSEVLQNELMEILGFDYFELVEKLLMERDKIARQLDQFATRSR 296
            :|.|..||.|     :||.:.......:|:|:.:|||:.|:.:        |:.||         
Zfish   280 VSQKKADEVL-----EILKTASDDRECENQLVLLLGFNTFDFI--------KVLRQ--------- 322

  Fly   297 RVMEVKQKRMEAAASGGAAERRPTVASAVVVQSAQEKQLSKMQRREEKKLQRIMRSIKDEEAEDD 361
                  .:||....         |:.::...::.:||.::||:  .::.|.:::..:::.|.|| 
Zfish   323 ------HRRMILYC---------TMLASAQSEAEKEKIINKME--ADQDLSKVLYQLQETEKED- 369

  Fly   362 PNCAVAVSVQQLRMQHQRKLLEAAQREPLLLSTKAAKAEYKQSSYNQPIHYPYVFD-SQLLAKQH 425
                 .:..::.|.:..||             ::....|.....:.:.:....:.| ..|...|.
Zfish   370 -----IIREERSRRERMRK-------------SRVDDLESMDIDHGESVSSRQLLDLEDLTFTQG 416

  Fly   426 AGFIGGSRITLPDNAQRIDNKQWEEVKIPASEPPPLSVGNKRVQIEELDDVGRLAFANCKELNRI 490
            :.|:...|..|||.:.|...|.:|||.:||.:|.|.......|.||:|....:..|...|.||||
Zfish   417 SHFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDEETLVGIEKLPKYAQAGFEGFKSLNRI 481

  Fly   491 QSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHLE-QGVINRDEFKIVYIAPMKALAA 554
            ||.:|.....::||:||||||||||||||:::::..|..|:. .|.||..:|||:|||||::|..
Zfish   482 QSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLVQ 546

  Fly   555 EMVDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGDVALISLVELLI 619
            |||.:|.|||.|..|.|.|||||.||.|.|:.||||:|.||||||::|||| |:.....||.|:|
Zfish   547 EMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKG-GERTYTQLVRLII 610

  Fly   620 IDEVHLLHGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAHFLRVNPMKGLFYFDS 684
            |||:||||.:||||:|:|:|||:|.||.:|..:|::|||||||||.|||..|||:|.|||||||:
Zfish   611 IDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVATCLRVDPSKGLFYFDN 675

  Fly   685 RFRPVPLDTNFVGIKSVKQLQQIADMDQCCYQKCVEMVQEGHQIMVFVHARNATVRTANVIRELA 749
            .||||||:..:|||...|.:::...|::..|:|.:|...: :|::||||:|..|.:||..||::.
Zfish   676 SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK-NQVLVFVHSRKETGKTARAIRDMC 739

  Fly   750 QQNNTSALFLPKDSAAHGLATRSIQRSRNKQLVELFSCGLAMHHAGMLRADRQMVEKYFVEGHIS 814
            .:.:|..|||.:.||:..:.....::.:|.:|.:|...|.|:|||||.|.||.:||..|.:.||.
Zfish   740 LEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQ 804

  Fly   815 VLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITS 879
            |||.|||||||||||||.|||:||.:|..:.|.:.:||.||:||:.|||||||:|..|.|.:|||
Zfish   805 VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDSKGEGILITS 869

  Fly   880 YDKLNHYLSLLTNQFPIESNFVNCLADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMRINPHVYG 944
            :.:|.:|||||..|.||||..|..|||.|||||.||.:.|..:|:.||.||||:|||..||.:||
Zfish   870 HGELQYYLSLLNQQLPIESQMVGKLADMLNAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYG 934

  Fly   945 IEYSELEKDPTLEARRRALIMSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETFN 1009
            :.:.:...||.||.||..|:.:||..|:|..::::::|:....:|||||.||:|||.::::.|:|
Zfish   935 VSHDDRSIDPLLERRRMDLVHTAATVLEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYN 999

  Fly  1010 ELMKPFMTQAEILAMISQAQEFQQLKVRDDEMEELDELKNAYCKIKPYGGSENVH---GKVNILI 1071
            :|:||.:::.|:..:.|.:.||:.:.||::|..||.:|....    |....|::.   .|:|:|:
Zfish  1000 QLLKPTLSEIELFRVFSLSSEFRNITVREEEKLELQKLLERV----PIPVKESIEEPSAKINVLL 1060

  Fly  1072 QTYLSNGYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNMLQLCKMFERRQWDFDCH 1136
            |.|:|...::.|:|.:||.|:|.:.||:.||:|.|||.:..|.|:...|.||||.::|.|.....
Zfish  1061 QAYISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSP 1125

  Fly  1137 LKQFPTINAETIDKLERRGLSVYRLRDMEHRELKEWLRSNTYADLVIRSAHELPLLEVEASLQPI 1201
            |:||..:..|.|.|:|::.....||.|:.|.|:.|.:|.......:.:..|:.|.|::...||||
Zfish  1126 LRQFRKLPEEVIKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPI 1190

  Fly  1202 TRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIYHSELFQVTRKLVMSGQSQQLV-M 1265
            ||:.|::::.|.|.|.|:|::||.: ::||:.:||.:|..:.|.|.|.:..|.   .|.:.|| .
Zfish  1191 TRSTLKVELTITPDFQWDDKIHGSS-EAFWILVEDVDSEVVLHHEYFLLKAKY---AQDEHLVTF 1251

  Fly  1266 TIPLKEPLPPQYYIRVSSDNWLGSTTCIPLSFQHLVLPEHHPPLTELLPLRPLPVSCLKNVVYES 1330
            .:|:.|||||||:||::||.||...|.:|:||:||:|||.:||.||||.|:|||||.|:|..:||
Zfish  1252 FVPVFEPLPPQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNGAFES 1316

  Fly  1331 LYK-FTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKAL 1394
            ||: |..|||||||:|:.:|::|:||.:||||||||||.||.||.|.|..|.:.:.|||.|::||
Zfish  1317 LYQNFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPMEAL 1381

  Fly  1395 VKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVS 1459
            .::...||.|:|| .:|..|||.|||:.:.|::.:.:..:||:||:|||.:||.|:.|:.||:||
Zfish  1382 AEQVFLDWHQKFQ-ENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVS 1445

  Fly  1460 LIVIDEIHLLGEDRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNF 1524
            |.:|||:||:|.|.|||:|||.||..:|||...|.||||.||::|:||:|:|:|||.:....:||
Zfish  1446 LFIIDEVHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSTTATFNF 1510

  Fly  1525 KPSVRPVPLQVHINGFPGKHYCPRMATMNRPTFQAIRTYSPCEPTIVFVSSRRQTRLTALDLITF 1589
            .|:||||||::||.||...|...|:.:|.:|.:.||..:||.:|.:|||.|||||||||:|::||
Zfish  1511 HPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVLVFVPSRRQTRLTAIDILTF 1575

  Fly  1590 VAGESNPKQFLHIPEDEIELILQNIREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQIL 1654
            .|.:..|::|||..|.::...::|:.:..||..|:.|:|..|.||...:|:.||.||.:..||::
Zfish  1576 CAADVVPQRFLHSTEKDLVPFMENLSDVTLKETLSNGVGYLHEGLSPTERRIVEHLFTSGAIQVV 1640

  Fly  1655 VATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDE 1719
            ||:.:|.||.|:.||||::..|:|::||:..|||.||.|||||:|:|.||..|:||..|::....
Zfish  1641 VASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIMCQGS 1705

  Fly  1720 KKNFYKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQLQ 1784
            ||:|:|||||:|.||||.|...|.:|.|||||..||::||.|:||||||:.:||:.:||:||.||
Zfish  1706 KKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQ 1770

  Fly  1785 DIEPENVNNFMSNLVERVVYELSAAACL-VERDGCLIPTFLGRISSYYYLSYRTMKHFLEDLQPG 1848
            .:...::::.:|.|||..:.:|..:.|: :|.:..:.|..||.|::|||::|.|::.|...|...
Zfish  1771 GMSHRHLSDHLSELVENTLQDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAK 1835

  Fly  1849 MNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSSSWDSSYTKTFLLLQAHFARQSL 1913
            ...:.::..|:::.|:..:|:||:||....::|:....:..:..::..:.||.||||||.:|..|
Zfish  1836 TKVRGLIEIISNAAEYKNIPIRHHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1900

  Fly  1914 PNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQSVIQARWFDGSEFLTLPGVNE 1978
             :::..:||:..|..|.|::||.||..:..||||..|...:|.|.|.||.|              
Zfish  1901 -SAELQSDTEEILSKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMW-------------- 1950

  Fly  1979 DNLDAFL-NIPHDDYDYLTLPVLKELCKQEYEVLAKPLRDAFEEHEIEKMYKV-IQDLPEIAIQI 2041
             :.|::| .:||     .|..::|. |..      |.:...|:..|:|...:. :..|.::.:  
Zfish  1951 -SKDSYLRQLPH-----FTSELIKR-CTD------KGVESIFDIMEMEDEDRTGLLQLSDVQV-- 2000

  Fly  2042 FVEGRHMENEYAKRPLSL----SDDTRGEWMSLHANEDYVLIVNLQR-LNVSGQRRGGGQSYTVH 2101
             .:.....|.|....||.    .||       :.:....|:.|.|:| ..|:|         .|.
Zfish  2001 -ADVARFCNRYPNIELSYEVVDKDD-------IKSGSPVVVQVQLEREEEVTG---------PVI 2048

  Fly  2102 CPKYPKPKNEAWFLTLGSQANDELLAMKRVSIRGQRCTNRISFQATPRLGRLQLTLYLMSDCLMG 2166
            .|.:|:.:.|.|::.:|...::.|:::||:::: |:...::.|.| |.:|....|||.|||..||
Zfish  2049 APLFPQKREEGWWVVIGDPKSNSLISIKRLTLQ-QKAKVKLDFVA-PVVGVHNYTLYFMSDAYMG 2111

  Fly  2167 FDQQYDLQFEIIDA 2180
            .||:|....|:.:|
Zfish  2112 CDQEYKFSTEVKEA 2125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
obeNP_650472.2 BRR2 450..1254 CDD:224125 367/807 (45%)
DEAD 488..666 CDD:278688 105/178 (59%)
HELICc 790..866 CDD:197757 47/75 (63%)
Sec63 989..1296 CDD:280962 115/310 (37%)
DEXDc 1332..1532 CDD:214692 105/200 (53%)
DEAD 1338..1510 CDD:278688 91/171 (53%)
HELICc 1605..1704 CDD:197757 42/98 (43%)
SEC63 1818..2176 CDD:214744 98/364 (27%)
snrnp200NP_001116729.1 BRR2 441..1238 CDD:224125 367/803 (46%)
DEAD 479..658 CDD:278688 105/179 (59%)
HELICc 681..867 CDD:238034 84/186 (45%)
Sec63 979..1282 CDD:280962 115/310 (37%)
DEAD 1325..1496 CDD:278688 91/171 (53%)
HELICc 1604..1690 CDD:197757 41/85 (48%)
SEC63 1805..2119 CDD:214744 98/362 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54133
OrthoDB 1 1.010 - - D154891at2759
OrthoFinder 1 1.000 - - FOG0001085
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100305
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.730

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