DRSC/TRiP Functional Genomics Resources

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Protein Alignment obe and DNApol-theta

DIOPT Version :9

Sequence 1:NP_650472.2 Gene:obe / 41891 FlyBaseID:FBgn0038344 Length:2183 Species:Drosophila melanogaster
Sequence 2:NP_524333.1 Gene:DNApol-theta / 41571 FlyBaseID:FBgn0002905 Length:2059 Species:Drosophila melanogaster


Alignment Length:1091 Identity:219/1091 - (20%)
Similarity:394/1091 - (36%) Gaps:316/1091 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1043 ELDELKNAYCKIKPYGGS---ENVHGKVNILIQTYLSNGYVKSFSLSSDMSY-----ITTNIGRI 1099
            :.|:.:||    :|..|:   ::...:||..||...|..:...||...:.::     ...|:.::
  Fly    22 QADDKENA----QPGNGNIQVQSAGNEVNSEIQEINSEFFRDEFSYEVNQAHKPAEQSVVNVSQV 82

  Fly  1100 SRALFSIVLRQNNAVLSGNML---QLC--KMFERRQWDFDCHLKQFPTINAETIDKLERRGLSVY 1159
            .:.: ::|..|::...|.:..   |:|  ..||......|..|.| |.::               
  Fly    83 QQHM-AVVSNQDSEDQSRSSALNDQICTQSSFEGEDAGADAVLDQ-PNLD--------------- 130

  Fly  1160 RLRDMEHRELKEWLRSNTYADLVIRSAHELPLLEVEASLQPITRTVLRIKVDIWPSFTWNDRVHG 1224
                           .|::.         .|..:.|||.|        :|.||..|.:    |..
  Fly   131 ---------------ENSFL---------CPAQDEEASEQ--------LKEDILHSHS----VLA 159

  Fly  1225 KTCQSFWLWIEDPESNYIYHSELFQVTR--------KLVMSGQSQQLVMTIPLKEPLPPQYYIRV 1281
            |  |.|             :.|:.|||:        :|.:|..|.::...:|.:..:|.......
  Fly   160 K--QEF-------------YQEISQVTQNLSSMSPNQLRVSPNSSRIREAMPERPAMPLDLNTLR 209

  Fly  1282 SSDNWLGSTTCIPLSFQHLVLPEHHPPLTELLPLRPLPVSCLK--NVVYESLYKFTHFNPIQTQI 1344
            |...|     .:|:|.|    .|:..  ..::.:....|.||.  .:::|               
  Fly   210 SISAW-----NLPMSIQ----AEYKK--KGVVDMFDWQVECLSKPRLLFE--------------- 248

  Fly  1345 FHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRS 1409
             ||      |::..|||.:|||:|:||.:.:.:.:..| ||:.|.|..::|:|::      |...
  Fly   249 -HC------NLVYSAPTSAGKTLVSEILMLKTVLERGK-KVLLILPFISVVREKM------FYMQ 299

  Fly  1410 SL----GLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLG 1470
            .|    |.:|....|..||. .......:.:.|.||.:.|......:..::.:.::|:||:||:.
  Fly   300 DLLTPAGYRVEGFYGGYTPP-GGFESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLIS 363

  Fly  1471 E-DRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNFKP-------- 1526
            : .||.::|:::::..::|...|..|:::.:|..|.|.|.|.:||.. ::.:.|::|        
  Fly   364 DKGRGYILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWLDA-ELYITNYRPVALKEMIK 427

  Fly  1527 -----------SVRPVPLQ-VHINGF-------------------------PGKHYCPRMATMNR 1554
                       .||.|..| |.:.|.                         |.|.:|..:|..  
  Fly   428 VGTVIYDHRLKLVRDVAKQKVLLKGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQ-- 490

  Fly  1555 PTFQAIRTYSPCEPTIVFVSSRRQTRLTALDLITFVAGESNPKQFLHIPED--EIELILQNIREQ 1617
             ...||......|..:   ..|.:|.|             ||:....:.:.  :|...|..:..:
  Fly   491 -LATAIHVQIKSETVL---GQRLRTNL-------------NPRAIAEVKQQLRDIPTGLDGVMSK 538

  Fly  1618 NLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGK 1682
            .:.:..||    |||||..::|..:|..|....:::||||:||:.||||||..|:|: :..|.||
  Fly   539 AITYACAF----HHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIR-SPLFGGK 598

  Fly  1683 VKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPF-PVESSLLGVLPEHI 1746
                 .|......||:|||||...|..|.::::.::......:..:.... |:.|.|......|:
  Fly   599 -----QMSSLTYRQMIGRAGRMGKDTLGESILICNEINARMGRDLVVSELQPITSCLDMDGSTHL 658

  Fly  1747 N---AEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQLQDIEPEN------VNNFMSNLV--- 1799
            .   .|:::..|.:.:..:|:    :....||.....:..::..|:.      :|:.:..||   
  Fly   659 KRALLEVISSGVANTKEDIDF----FVNCTLLSAQKAFHAKEKPPDEESDANYINDALDFLVEYE 719

  Fly  1800 ----------ERVVYELS--AAACLVE----RDGCLIPTFLGR---------------ISSYYYL 1833
                      |..||..:  .||||..    .||.::...|.:               :.:.|.:
  Fly   720 FVRLQRNEERETAVYVATRLGAACLASSMPPTDGLILFAELQKSRRSFVLESELHAVYLVTPYSV 784

  Fly  1834 SYRTMK-------HFLEDLQPGMNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSS 1891
            .|:...       |..|.|...|.....|:.:.|::.:..|  |.......::|....||     
  Fly   785 CYQLQDIDWLLYVHMWEKLSSPMKKVGELVGVRDAFLYKAL--RGQTKLDYKQMQIHKRF----- 842

  Fly  1892 SWDSSYTKTFLLLQAHFARQSLPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLM 1956
                                      |:......|.|.|.:...:..|...||.|.:...:....
  Fly   843 --------------------------YIALALEELVNETPINVVVHKYKCHRGMLQSLQQMASTF 881

  Fly  1957 QSVIQA-----RWFDGSEFLTLPGVNEDNLDAFLNIPHDDYDYLTLPVLKE 2002
            ..::.|     :|   |....:....:|.|  |..|..|..|.:.:|.|.:
  Fly   882 AGIVTAFCNSLQW---STLALIVSQFKDRL--FFGIHRDLIDLMRIPDLSQ 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
obeNP_650472.2 BRR2 450..1254 CDD:224125 42/231 (18%)
DEAD 488..666 CDD:278688
HELICc 790..866 CDD:197757
Sec63 989..1296 CDD:280962 50/273 (18%)
DEXDc 1332..1532 CDD:214692 52/223 (23%)
DEAD 1338..1510 CDD:278688 45/176 (26%)
HELICc 1605..1704 CDD:197757 36/100 (36%)
SEC63 1818..2176 CDD:214744 33/212 (16%)
DNApol-thetaNP_524333.1 BRR2 209..978 CDD:224125 172/832 (21%)
DEAD 251..404 CDD:278688 43/160 (27%)
HELICc 542..616 CDD:197757 35/83 (42%)
PolA 1489..2055 CDD:223820
DNA_pol_A_theta 1668..2053 CDD:176475
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466312
Domainoid 1 1.000 45 1.000 Domainoid score I721
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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