DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment obe and mus301

DIOPT Version :9

Sequence 1:NP_650472.2 Gene:obe / 41891 FlyBaseID:FBgn0038344 Length:2183 Species:Drosophila melanogaster
Sequence 2:NP_648178.1 Gene:mus301 / 38905 FlyBaseID:FBgn0002899 Length:1051 Species:Drosophila melanogaster


Alignment Length:974 Identity:207/974 - (21%)
Similarity:377/974 - (38%) Gaps:244/974 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1259 QSQQLVM-TIPLKEPLPPQYYIRVSSDNWLG---------------STTCIPLSFQHLVLP---- 1303
            |:.||.: .:..|:|..|:..:....|:.:.               ..||..|..|.|:.|    
  Fly   157 QNTQLFLDAMTFKKPKTPEKLLAPLKDDSMSFISKSVIEGLVQGTQYVTCEELKNQSLLDPVNWE 221

  Fly  1304 --------------EHHPPLTEL--LPLRPLPVSCLKNVVYE-----SLYKFTHFNPIQTQIFHC 1347
                          :..|...|.  ||.:      :|.::.|     |||::..         .|
  Fly   222 TQAFADFEKNNQDIDKFPSKGEFYGLPDK------VKKMILEHKGINSLYEWQD---------EC 271

  Fly  1348 L----YHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPKCK---VVYIAPLKALVKERIADWEQR 1405
            |    .....|::...||..|||:||||.:.|.|    .|:   |::|.|..::|:|::      
  Fly   272 LNLPAIRQRKNLIYALPTSGGKTLVAEILMLREL----LCRERNVLFILPYVSIVQEKV------ 326

  Fly  1406 FQRSSLGLKVVEL----------TGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSL 1460
               |::....::|          .|...|..:..|.| |.:.:.||...:..|....:....:.|
  Fly   327 ---SAMSPFAIDLDFIVEEYTAGKGKCPPQPRRKRRS-LFIASIEKGAVLMDSLIDVQRPHEIGL 387

  Fly  1461 IVIDEIHLLGE-DRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNF 1524
            :|:||:||:|| .||..:|..:::..|::::    |:|||:|..:.|..:::::|..:.     :
  Fly   388 VVVDELHLIGEKGRGATLEAFLTKVMFLNAN----IQIVGMSATIGNLSEISSFLNADV-----Y 443

  Fly  1525 KPSVRPVPLQVHINGFPG------------KHYCP-RMATMNRPTFQAIRTYSP---------CE 1567
            ....|||.|:.:|...|.            :.:.| |....|..  :|::...|         |.
  Fly   444 TRGFRPVELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYS--EAVKRADPDHLAGLISECA 506

  Fly  1568 P---TIVFVSSRRQTRLTALDLITFVAGESNPKQ--FLHIPEDEIELI-----LQNIREQNLKFC 1622
            |   .:||..||:.....||.|...|     ||.  |.|...::::|:     :..|....|...
  Fly   507 PEHCCLVFCPSRKNCENVALLLSRIV-----PKHKFFEHRRSEKLDLMDALDKMCGILSPVLAKT 566

  Fly  1623 LAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIK----GTEYFDGKV 1683
            |.:||..||:||...:||.:|..:....:.::..|:|||.||||||..|:|:    |.|:     
  Fly   567 LPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRAPYVGQEF----- 626

  Fly  1684 KKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFP-------------VE 1735
                 :.:....||:|||||......|.::::...:......:.|:.|..             ::
  Fly   627 -----LTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQ 686

  Fly  1736 SSLLGV-----------LPEHINAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQLQDIEPE 1789
            |.:|.|           |...:|:.:::...:|.:.|::.:. ....|.:.:|.   .||..||:
  Fly   687 SLILSVVGLNLAECRRDLNRLVNSTLLSVQAKSLEVAVNEIV-LRILREMFKNK---VLQLAEPQ 747

  Fly  1790 NVNNFMSN--LVERVVYELSAAA----CLVERDGCLIPTFLGRISSYYYLSYRTMKHFLEDLQPG 1848
            ..:...|:  :..:.|.:.:..|    .|:.:......|.:||.:....:.|:......::|:..
  Fly   748 AKSKINSSDIITSQDVSQANRPAGDRRLLIGQSTPFKLTNIGRAAFKAGIDYKRANAIHKELKQA 812

  Fly  1849 MNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSSSWDSSYTKTFLLLQAHFARQSL 1913
            ...    |.:.:......|.|..|.::..:|:     |...:|.....||...|..||.|.:...
  Fly   813 QQQ----LILTNYLHLLYLVVCFNSNERGDEL-----FPADASILFGVYTSLPLDSQAMFKQLGF 868

  Fly  1914 PNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQSVIQARWFDGSEFLTLPGVNE 1978
            ..:           :|.|:.:..    :.:|.||  |.:.:|.:.:|.|   |....|.:|.|..
  Fly   869 TEA-----------HAARLFKTQ----SVQGPLS--LQLNRLYKVLILA---DILNLLPIPSVAS 913

  Fly  1979 DNLDAFLNIPHDDYDYL------TLPVLKELCKQEYEVLA-KPLRDAFEE--HEIEKM----YKV 2030
            .     .|:......:|      ....:..||::..|... |||   ||.  |::::.    .:.
  Fly   914 K-----YNVERGTLQHLISQSTAAASAIVRLCEELEEFWCYKPL---FERILHKMDRCGTFELEP 970

  Fly  2031 IQDLPEIAI----QIFVEGRHMENEYAK-RPLSLSDDTRGEWMSLHANEDYV---LIVNLQRLN 2086
            :.:||.:.|    |::..|.....:.|: ||..|....  |.|.|....:.|   .|:.:::|:
  Fly   971 LMELPAVKINRARQLYAAGFQTIGDIARVRPSHLVQSL--EHMPLRVATEIVSAAKIILMKKLD 1032

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
obeNP_650472.2 BRR2 450..1254 CDD:224125
DEAD 488..666 CDD:278688
HELICc 790..866 CDD:197757
Sec63 989..1296 CDD:280962 9/52 (17%)
DEXDc 1332..1532 CDD:214692 52/217 (24%)
DEAD 1338..1510 CDD:278688 48/189 (25%)
HELICc 1605..1704 CDD:197757 33/107 (31%)
SEC63 1818..2176 CDD:214744 57/290 (20%)
mus301NP_648178.1 BRR2 247..998 CDD:224125 182/846 (22%)
DEXHc_POLQ-like 247..449 CDD:350784 56/239 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466322
Domainoid 1 1.000 45 1.000 Domainoid score I721
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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