DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment obe and Snrnp200

DIOPT Version :9

Sequence 1:NP_650472.2 Gene:obe / 41891 FlyBaseID:FBgn0038344 Length:2183 Species:Drosophila melanogaster
Sequence 2:NP_796188.2 Gene:Snrnp200 / 320632 MGIID:2444401 Length:2136 Species:Mus musculus


Alignment Length:2251 Identity:841/2251 - (37%)
Similarity:1297/2251 - (57%) Gaps:222/2251 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LRAKTELEARSRR-------LNVLRQARTTSAA--STTTNSQNKEEQTIARLLAQMPTEKQPAAK 66
            |:|...|..|:||       |:::.:...|...  :..|..|.:||:...|       .|:...:
Mouse    21 LQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKPQMQEERRAKR-------RKRDEDR 78

  Fly    67 VQLQKLRNL------VQECMGYEEQPQVVE----HAAL--FLFWLLLDQ----------RVLLVA 109
            ..:.|::..      :.|.:|...:|:..|    :..|  |:...|.||          .||.|.
Mouse    79 HDMNKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVL 143

  Fly   110 TTQRLHG---------MFGQTFDRKKTQIHDCVQAIGDLLEDHERSALKRWRQTHHKVPGVGPLW 165
            ..::|..         :.|||.|   |:.|..|. :|..:.|:...     ::..:....:...:
Mouse   144 KNEKLRDKERRREIDLLLGQTDD---TRYHVLVN-LGKKITDYGGD-----KEIQNMDDNIDETY 199

  Fly   166 GAHIHVKCTPSEWMDISLLTDLAPDALLKNRTVNKFSMKHTTKAAPVAS---TSSEAAKLSPE-- 225
            |.::..:....|. |..:..::..:|...:...::..::.|..|..|||   .||:...|.|.  
Mouse   200 GVNVQFESDEEEG-DEDVYGEVREEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPRDI 263

  Fly   226 ----LQTLLE-------ISAKLDDEHLIIRVGDILGSQRSSEVLQNELMEILGFDYFELVEKLLM 279
                ||..|.       :|.|..||.|     :||.:.......:|:|:.:|||:.|:.::.|  
Mouse   264 DAFWLQRQLSRFYDDAIVSQKKADEVL-----EILKTASDDRECENQLVLLLGFNTFDFIKVL-- 321

  Fly   280 ERDKIARQLDQFATRSRRVMEVKQKRMEAAASGGAAERRPTVASAVVVQSAQEKQLSK----MQR 340
                          |..|:|.:....:.:|.|....||       :|.:...:.:|||    :..
Mouse   322 --------------RQHRMMILYCTLLASAQSEPEKER-------IVGKMEADPELSKFLYQLHE 365

  Fly   341 REEKKLQRIMRSIKDEEAEDDPNCAVAVSVQQLRMQHQRKLLEAAQREPLLLSTKAAKAEYKQSS 405
            .|::.|.|..||.::.             |:|.||....:.::..|....|...:....|     
Mouse   366 TEKEDLIREERSRRER-------------VRQSRMDTDLETMDLDQGGEALAPRQVLDLE----- 412

  Fly   406 YNQPIHYPYVFDSQLLAKQHAGFIGGSRITLPDNAQRIDNKQWEEVKIPASEPPPLSVGNKRVQI 470
                         .|:..|.:.|:...|..|||.:.|...|.:|||.:||.:|.|.....:.:.:
Mouse   413 -------------DLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPV 464

  Fly   471 EELDDVGRLAFANCKELNRIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHLE-QG 534
            |:|....:..|...|.||||||.::..|..::||:|:||||||||||||::.::..|..|:. .|
Mouse   465 EKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG 529

  Fly   535 VINRDEFKIVYIAPMKALAAEMVDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWD 599
            .||.|:|||:|||||::|..|||.:|.|||.:..|.|.|||||.||.|.|::||||:|.||||||
Mouse   530 TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWD 594

  Fly   600 VVTRKGSGDVALISLVELLIIDEVHLLHGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNY 664
            ::|||| |:.....||.|:::||:||||.:||||:||||||.:|.:|.:|..:|::|||||||||
Mouse   595 IITRKG-GERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY 658

  Fly   665 IDVAHFLRVNPMKGLFYFDSRFRPVPLDTNFVGIKSVKQLQQIADMDQCCYQKCVEMVQEGHQIM 729
            .|||.||||:|.|||||||:.||||||:..:|||...|.:::...|::..|:|.:|...: :|::
Mouse   659 EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK-NQVL 722

  Fly   730 VFVHARNATVRTANVIRELAQQNNTSALFLPKDSAAHGLATRSIQRSRNKQLVELFSCGLAMHHA 794
            ||||:|..|.:||..||::..:.:|..|||.:.||:..:.....::.:|.:|.:|...|.|:|||
Mouse   723 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA 787

  Fly   795 GMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLGILDVLQI 859
            ||.|.||.:||..|.:.||.|||.|||||||||||||.|||:||.:|..:.|.:.:||.||:||:
Mouse   788 GMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQM 852

  Fly   860 FGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFPIESNFVNCLADNLNAEIGLGTITNVDEAI 924
            .|||||||:|..|.|.:|||:.:|.:|||||..|.||||..|:.|.|.|||||.||.:.|..:|:
Mouse   853 LGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAV 917

  Fly   925 EWLSYTYLFVRMRINPHVYGIEYSELEKDPTLEARRRALIMSAAMSLDKARMMRFNQRTMDMNIT 989
            .||.|.||::||..:|.:|||.:.:|:.||.|:.||..|:.:||:.|||..:::::::|.:..:|
Mouse   918 NWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVT 982

  Fly   990 DLGRTASYFYIKYDTVETFNELMKPFMTQAEILAMISQAQEFQQLKVRDDEMEELDELKNAYCKI 1054
            :|||.||::||..|||:|:|:|:||.:::.|:..:.|.:.||:.:.||::|..||.:|....   
Mouse   983 ELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERV--- 1044

  Fly  1055 KPYGGSENVH---GKVNILIQTYLSNGYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLS 1116
             |....|::.   .|:|:|:|.::|...::.|:|.:||.|:|.:.||:.||:|.|||.:..|.|:
Mouse  1045 -PIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLT 1108

  Fly  1117 GNMLQLCKMFERRQWDFDCHLKQFPTINAETIDKLERRGLSVYRLRDMEHRELKEWLRSNTYADL 1181
            ...|.||||.::|.|...|.|:||..:..|.:.|:|::.....||.|:.|.|:.|.:|.......
Mouse  1109 DKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKT 1173

  Fly  1182 VIRSAHELPLLEVEASLQPITRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIYHSE 1246
            :.:..|..|.||:...||||||:.|::::.|.|.|.|:::|||.: ::||:.:||.:|..|.|.|
Mouse  1174 IHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSS-EAFWILVEDVDSEVILHHE 1237

  Fly  1247 LFQVTRKLVMSGQSQQLV-MTIPLKEPLPPQYYIRVSSDNWLGSTTCIPLSFQHLVLPEHHPPLT 1310
            .|.:..|.   .|.:.|: ..:|:.|||||||:|||.||.||...|.:|:||:||:|||.:||.|
Mouse  1238 YFLLKAKY---AQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPT 1299

  Fly  1311 ELLPLRPLPVSCLKNVVYESLY--KFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAI 1373
            |||.|:|||||.|:|..:||||  ||..|||||||:|:.:|::|:||.:||||||||||.||.||
Mouse  1300 ELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAI 1364

  Fly  1374 FRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTT 1438
            .|.|.||.:.:.|||.|::||.::...||.::|| ..|..|||.|||:.:.|::.:.:..:|::|
Mouse  1365 LRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQ-DRLNKKVVLLTGETSTDLKLLGKGNIIIST 1428

  Fly  1439 PEKWDGISRSWQTREYVQHVSLIVIDEIHLLGEDRGPVIEVIVSRTNFISSHTGRAIRIVGLSTA 1503
            |||||.:||.|:.|:.||:::|.|:||:||:|.:.|||:|||.||..:|||...|.||||.||::
Mouse  1429 PEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSS 1493

  Fly  1504 LANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGKHYCPRMATMNRPTFQAIRTYSPCEP 1568
            |:||:|:|:|||.:....:||.|:||||||::||.||...|...|:.:|.:|.:.||..:||.:|
Mouse  1494 LSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKP 1558

  Fly  1569 TIVFVSSRRQTRLTALDLITFVAGESNPKQFLHIPEDEIELILQNIREQNLKFCLAFGIGLHHAG 1633
            .||||.||:||||||:|::|..|.:...::|||..|.::...|:.:.:..||..|..|:|..|.|
Mouse  1559 VIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEG 1623

  Fly  1634 LQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMM 1698
            |...:|:.||:||.:..||::||:.:|.||:|:.||||:|..|:|::||:..|||.||.|||||:
Mouse  1624 LSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMV 1688

  Fly  1699 GRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQAALD 1763
            |.|.||..|:||..|::....||:|:|||||:|.||||.|...:.:|.|||||..|:::||.|:|
Mouse  1689 GHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVD 1753

  Fly  1764 YLTWTYFFRRLLRNPSYYQLQDIEPENVNNFMSNLVERVVYELSAAACL-VERDGCLIPTFLGRI 1827
            |||||:.:||:.:||:||.||.|...::::.:|.|||:.:.:|..:.|: :|.:..:.|..||.|
Mouse  1754 YLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMI 1818

  Fly  1828 SSYYYLSYRTMKHFLEDLQPGMNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSSS 1892
            ::|||::|.|::.|...|......:.::..|:::.|::.:|:||:||....::|:....:..:..
Mouse  1819 AAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPK 1883

  Fly  1893 WDSSYTKTFLLLQAHFARQSLPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQ 1957
            ::..:.||.||||||.:|..| :::..:||:..|..|.|::||.||..:..||||..|...:|.|
Mouse  1884 FNDPHVKTNLLLQAHLSRMQL-SAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQ 1947

  Fly  1958 SVIQARWFDGSEFLTLPGVNEDNLDAFL-NIPHDDYDYLTLPVLKELCKQEYEVLAKPLRDAFE- 2020
            .|.||.|               :.|::| .:||...:::      :.|..      |.:...|: 
Mouse  1948 MVTQAMW---------------SKDSYLKQLPHFTSEHI------KRCTD------KGVESVFDI 1985

  Fly  2021 -EHEIEKMYKVIQ----DLPEIAIQIFVEGRHMENEYAKRPLS---LSDDTRGEWMSLHANEDYV 2077
             |.|.|:...::|    .:.::|        ...|.|....||   :..|      |:.:....|
Mouse  1986 MEMEDEERNALLQLTDSQIADVA--------RFCNRYPNIELSYEVVDKD------SIRSGGPVV 2036

  Fly  2078 LIVNLQR-LNVSGQRRGGGQSYTVHCPKYPKPKNEAWFLTLGSQANDELLAMKRVSIRGQRCTNR 2141
            ::|.|:| ..|:|         .|..|.:|:.:.|.|::.:|...::.|:::||:::: |:...:
Mouse  2037 VLVQLEREEEVTG---------PVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQ-QKAKVK 2091

  Fly  2142 ISFQATPRLGRLQLTLYLMSDCLMGFDQQYDLQFEIIDAKE 2182
            :.|.| |..|....|||.|||..||.||:|...   :|.||
Mouse  2092 LDFVA-PATGGHNYTLYFMSDAYMGCDQEYKFS---VDVKE 2128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
obeNP_650472.2 BRR2 450..1254 CDD:224125 363/807 (45%)
DEAD 488..666 CDD:278688 102/178 (57%)
HELICc 790..866 CDD:197757 47/75 (63%)
Sec63 989..1296 CDD:280962 117/310 (38%)
DEXDc 1332..1532 CDD:214692 103/201 (51%)
DEAD 1338..1510 CDD:278688 88/171 (51%)
HELICc 1605..1704 CDD:197757 43/98 (44%)
SEC63 1818..2176 CDD:214744 98/368 (27%)
Snrnp200NP_796188.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..81 8/48 (17%)
BRR2 452..1241 CDD:224125 359/795 (45%)
DEAD 482..661 CDD:278688 102/179 (57%)
DEAH box 615..618 2/2 (100%)
HELICc 684..870 CDD:238034 84/186 (45%)
Sec63 982..1285 CDD:280962 117/310 (38%)
DEXDc 1320..1508 CDD:214692 98/188 (52%)
DEAD 1329..1500 CDD:278688 88/171 (51%)
DEAH box 1454..1457 2/2 (100%)
HELICc 1616..1694 CDD:197757 39/77 (51%)
SEC63 1809..2125 CDD:214744 98/371 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54133
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001085
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100305
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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