DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment obe and snrnp200

DIOPT Version :9

Sequence 1:NP_650472.2 Gene:obe / 41891 FlyBaseID:FBgn0038344 Length:2183 Species:Drosophila melanogaster
Sequence 2:XP_002932581.2 Gene:snrnp200 / 100145098 XenbaseID:XB-GENE-981975 Length:2135 Species:Xenopus tropicalis


Alignment Length:2244 Identity:844/2244 - (37%)
Similarity:1299/2244 - (57%) Gaps:208/2244 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LRAKTELEARSRR-------LNVLRQARTTSAA--STTTNSQNKEEQTIARLLAQMPTEKQPAAK 66
            |:|...|..|:||       |:::.:...|...  :..|..|.:||:.:.|       .|:...:
 Frog    21 LQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQKTKPQMQEERRLKR-------RKRDEDR 78

  Fly    67 VQLQKLRNL------VQECMGYEEQPQVVE----HAAL--FLFWLLLDQ----------RVLLVA 109
            ..:.|::..      :.|.:|...:|:..|    :..|  |:...|.||          .||.|.
 Frog    79 HDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVL 143

  Fly   110 TTQRLHG---------MFGQTFDRKKTQIHDCVQAIGDLLEDHERSALKRWRQTHHKVPGVGPLW 165
            ...||..         :.|||.|   |:.|..|. :|..:.|:...     ::..:....:...:
 Frog   144 KNDRLRDKDRRREVDQLLGQTDD---TRYHVLVN-LGKKISDYGGD-----KEIQNMDDNIDETY 199

  Fly   166 GAHIHVKCTPSEWMDISLLTDLAPDALLKNRTVNKFSMKHTTKAAPVAST----SSEAAKLSPE- 225
            |.::..:....|. |..:..::..:|...:...:: ::...|.:|.:||:    ||:...|.|. 
 Frog   200 GVNVQFESDEEEG-DEDIYGEVRDEASDDDMDGDE-AVVRCTLSANLASSGELMSSKKKDLHPRD 262

  Fly   226 -----LQTLLE-------ISAKLDDEHLIIRVGDILGSQRSSEVLQNELMEILGFDYFELVEKLL 278
                 ||..|.       :|.|..||  ::.:....|..|..|   |:|:.:|||:.|:.::.| 
 Frog   263 IDAFWLQRQLSRFYDDAIVSQKKADE--VLEILKTAGDDRECE---NQLVLLLGFNTFDFIKVL- 321

  Fly   279 MERDKIARQLDQFATRSRRVMEVKQKRMEAAASGGAAERRPTVASAVVVQSAQEKQLSK----MQ 339
                           |..|:|.:....:.:|.|....||       ::.:...:.:|||    :|
 Frog   322 ---------------RQHRMMIMYCTLLASAQSEAEKER-------IMGKMESDPELSKYLYQLQ 364

  Fly   340 RREEKKLQRIMRSIKDEEAEDDPNCAVAVSVQQLRMQHQRKLLEAAQREPLLLSTKAAKAEYKQS 404
            ..|::.|.|..|..:|:             |:||.:....:.:|..|.|...             
 Frog   365 ETEKEDLIREARGHRDK-------------VRQLNVDMDLENMETEQGEAFA------------- 403

  Fly   405 SYNQPIHYP-YVFD-SQLLAKQHAGFIGGSRITLPDNAQRIDNKQWEEVKIPASEPPPLSVGNKR 467
                    | .|.| ..|:..|.:.|:...|..|||.:.|...|.:|||.:||.:|.|.:...:.
 Frog   404 --------PRQVLDLEDLVFAQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFASDEQL 460

  Fly   468 VQIEELDDVGRLAFANCKELNRIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHLE 532
            |.:|:|....:..|...|.||||||.:|..|..::||:|:||||||||||||::.::..|..|:.
 Frog   461 VPVEKLPKYAQSGFEGFKTLNRIQSKLFKAALETDENLLLCAPTGAGKTNVALMCMLREIGKHIN 525

  Fly   533 -QGVINRDEFKIVYIAPMKALAAEMVDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVTTPE 596
             .|.||.|.|||:|||||::|..|||.:|||||.:..|.|.|||||.||.|.|:.||||:|.|||
 Frog   526 VDGTINVDNFKIIYIAPMRSLVQEMVGSFSKRLSTYGITVAELTGDHQLCKEEINATQIIVCTPE 590

  Fly   597 KWDVVTRKGSGDVALISLVELLIIDEVHLLHGERGPVVEALVARTLRLVESSQSMIRIVGLSATL 661
            |||::|||| |:.....||.|:|:|||||||.:||||:|:||||.:|.:|.:|..:|::||||||
 Frog   591 KWDIITRKG-GERTYTQLVRLIILDEVHLLHDDRGPVLESLVARAIRNIEMTQEDVRLIGLSATL 654

  Fly   662 PNYIDVAHFLRVNPMKGLFYFDSRFRPVPLDTNFVGIKSVKQLQQIADMDQCCYQKCVEMVQEGH 726
            |||.|||.||||:|.|||||||:.||||||:..:|||...|.:::...|::..|:|.:|...: :
 Frog   655 PNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK-N 718

  Fly   727 QIMVFVHARNATVRTANVIRELAQQNNTSALFLPKDSAAHGLATRSIQRSRNKQLVELFSCGLAM 791
            |::||||:|..|.:|:..||::..:.:|..|||.:.||:..:.....::.:|.:|.:|...|.|:
 Frog   719 QVLVFVHSRKETGKTSRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 783

  Fly   792 HHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLGILDV 856
            |||||.|.||.:||..|.:.||.|||.|||||||||||||.|||:||.:|..:.|.:.:||.||:
 Frog   784 HHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDI 848

  Fly   857 LQIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFPIESNFVNCLADNLNAEIGLGTITNVD 921
            ||:.|||||||:|..|.|.:|||:.:|.:|||||..|.||||..|..|.|.||||:.||.:.|..
 Frog   849 LQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNAEVVLGHVQNAK 913

  Fly   922 EAIEWLSYTYLFVRMRINPHVYGIEYSELEKDPTLEARRRALIMSAAMSLDKARMMRFNQRTMDM 986
            :|:.||.||||::||..:|::|||.:.:|:.||.||.||..||.:||:.|||..:|:::::|.:.
 Frog   914 DAVNWLGYTYLYIRMLRSPNLYGISHDDLKIDPLLEQRRLDLIHTAALLLDKNNLMKYDKKTGNF 978

  Fly   987 NITDLGRTASYFYIKYDTVETFNELMKPFMTQAEILAMISQAQEFQQLKVRDDEMEELDELKNAY 1051
            .:|:|||.||:|||..|:::|:|:|:||.:::.|:..:.|.:.||:.:.||::|..||.:|....
 Frog   979 QVTELGRIASHFYITNDSIQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERV 1043

  Fly  1052 CKIKPYGGSENVH---GKVNILIQTYLSNGYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNA 1113
                |....|::.   .|:|:|:|.::|...::.|:|.:||.|:|.:.||:.||:|.|||.:..|
 Frog  1044 ----PIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWA 1104

  Fly  1114 VLSGNMLQLCKMFERRQWDFDCHLKQFPTINAETIDKLERRGLSVYRLRDMEHRELKEWLRSNTY 1178
            .|:...|.||||.::|.|...|.|:||..:..|.:.|:|::.....||.|:.|.|:.|.:|....
 Frog  1105 QLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKM 1169

  Fly  1179 ADLVIRSAHELPLLEVEASLQPITRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIY 1243
            ...:.:..|..|.|::...||||||:.|::::.|.|.|.|:::|||.: ::||:.:||.:|..|.
 Frog  1170 GKTIHKYVHLFPKLDLSVHLQPITRSTLKVELTITPDFQWDEKVHGSS-EAFWILVEDVDSEVIL 1233

  Fly  1244 HSELFQVTRKLVMSGQSQQLV-MTIPLKEPLPPQYYIRVSSDNWLGSTTCIPLSFQHLVLPEHHP 1307
            |.|.|.:..|.   .|.:.|| ..:|:.|||||||:|||.||.||...|.:|:||:||:|||.:|
 Frog  1234 HHEYFLLKAKY---AQDEHLVTFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYP 1295

  Fly  1308 PLTELLPLRPLPVSCLKNVVYESLY--KFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAE 1370
            |.||||.|:|||||.|:|..:||||  ||..|||||||:|:.:|::|:||.:||||||||||.||
 Frog  1296 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTIYNSDDNVFVGAPTGSGKTICAE 1360

  Fly  1371 IAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLI 1435
            .||.|.|.||.:.:.|||.|::||.::...||.::|| ..|..|||.|||:.:.|::.:.:..:|
 Frog  1361 FAILRMLLQNSEGRCVYITPMEALAEQVFMDWFEKFQ-DRLYKKVVLLTGETSTDLKLLGKGNII 1424

  Fly  1436 VTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLGEDRGPVIEVIVSRTNFISSHTGRAIRIVGL 1500
            ::||||||.:||.|:.|:.||:|||.::||.||:|...|||:|||.||..:|||...|.||:|.|
 Frog  1425 ISTPEKWDILSRRWKQRKNVQNVSLFIVDETHLIGGANGPVLEVICSRMRYISSQIERPIRVVAL 1489

  Fly  1501 STALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGKHYCPRMATMNRPTFQAIRTYSP 1565
            |::|:||:|:|:|||.:....:||.|:||||||::||.||...|...|:.:|.:|.:.||..:||
 Frog  1490 SSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIVKHSP 1554

  Fly  1566 CEPTIVFVSSRRQTRLTALDLITFVAGESNPKQFLHIPEDEIELILQNIREQNLKFCLAFGIGLH 1630
            .:|.||||.||:||||||:|::|..|.:...::|||..|.::...|:.:.::.||..|..|:|..
 Frog  1555 KKPIIVFVPSRKQTRLTAIDILTTCAADVQRQRFLHCTEKDLAPYLEKLSDETLKETLLNGVGYL 1619

  Fly  1631 HAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITDVL 1695
            |.||...:|:.||:||....:|::||:.:|.||:|:.||||:|..|:|::||:..|||.||.|||
 Frog  1620 HEGLSSLERRIVEQLFNTGAVQVIVASRSLCWGLNIAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1684

  Fly  1696 QMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQA 1760
            ||:|.|.||..|:||..|::....||:|:|||||:|.||||.|...|.:|.|||||..||::||.
 Frog  1685 QMVGYANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQD 1749

  Fly  1761 ALDYLTWTYFFRRLLRNPSYYQLQDIEPENVNNFMSNLVERVVYELSAAACL-VERDGCLIPTFL 1824
            |:||||||:.:||:.:||:||.||.:...::::.:|.|||..:.:|..:.|: :|.:..:.|..|
 Frog  1750 AVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEHTLSDLEQSKCISIEDEMDVAPLNL 1814

  Fly  1825 GRISSYYYLSYRTMKHFLEDLQPGMNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPP 1889
            |.|::|||::|.|::.|...|......:.::..|:::.|::.:|:||:||....::|:....:..
 Frog  1815 GMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYESIPIRHHEDNLLRQLAQKVPHKLT 1879

  Fly  1890 SSSWDSSYTKTFLLLQAHFARQSLPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQ 1954
            :..::..:.||.||||||.:|..| :::..:||:..|..|.|::||.||..:..||||..|...:
 Frog  1880 NPKFNDPHVKTNLLLQAHLSRMQL-SAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAME 1943

  Fly  1955 LMQSVIQARWFDGSEFLTLPGVNEDNLDAFL-NIPHDDYDYLTLPVLKELCKQEYEVLAKPLRDA 2018
            |.|.|.||.|               :.|::| .:||...:::      :.|.:      |.:...
 Frog  1944 LAQMVTQAMW---------------SKDSYLKQLPHFSSEHI------KRCTE------KGVESV 1981

  Fly  2019 FEEHEIEKMYKVIQDLPEIAIQIFVEGRHMENEYAKRPLSLSDDTRGEWMSLHANEDYVLIVNLQ 2083
            |:..|:|...:.  :|.:::.....:.....|.|....||.....|.   |:.:....|::|.|:
 Frog  1982 FDIMEMEDEDRT--ELLQLSDSQMADVARFCNRYPNIELSYEVAERD---SIRSGGAVVVLVQLE 2041

  Fly  2084 R-LNVSGQRRGGGQSYTVHCPKYPKPKNEAWFLTLGSQANDELLAMKRVSIRGQRCTNRISFQAT 2147
            | ..|:|         .|..|.:|:.:.|.|::.:|...::.|:::||:::: |:...::.|.| 
 Frog  2042 REEEVTG---------PVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQ-QKAKVKLDFVA- 2095

  Fly  2148 PRLGRLQLTLYLMSDCLMGFDQQYDLQFEIIDAK 2181
            |..|....|||.|||..||.||:|....::.:|:
 Frog  2096 PATGNHNYTLYFMSDAYMGCDQEYKFSVDVKEAE 2129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
obeNP_650472.2 BRR2 450..1254 CDD:224125 367/807 (45%)
DEAD 488..666 CDD:278688 105/178 (59%)
HELICc 790..866 CDD:197757 47/75 (63%)
Sec63 989..1296 CDD:280962 116/310 (37%)
DEXDc 1332..1532 CDD:214692 103/201 (51%)
DEAD 1338..1510 CDD:278688 88/171 (51%)
HELICc 1605..1704 CDD:197757 42/98 (43%)
SEC63 1818..2176 CDD:214744 96/359 (27%)
snrnp200XP_002932581.2 Helicase_PWI 254..363 CDD:375590 29/136 (21%)
BRR2 443..1240 CDD:224125 367/803 (46%)
PRK00254 1309..1896 CDD:234702 263/587 (45%)
DEXHc_Brr2_2 1324..1514 CDD:350779 96/190 (51%)
SEC63 1808..2124 CDD:214744 96/359 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54133
OrthoDB 1 1.010 - - D154891at2759
OrthoFinder 1 1.000 - - FOG0001085
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.930

Return to query results.
Submit another query.