DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and Opn1sw

DIOPT Version :9

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_112277.2 Gene:Opn1sw / 81644 RGDID:621033 Length:346 Species:Rattus norvegicus


Alignment Length:339 Identity:84/339 - (24%)
Similarity:161/339 - (47%) Gaps:34/339 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LEPMWFGIIGFVIAILGTMSLAG---NFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMM-MFTMFP 102
            :.|:|  ......|.:|.:..||   |..|:......|.||.|.|..:||::...|:. :|::| 
  Rat    26 IAPVW--AFHLQAAFMGFVFFAGTPLNATVLVATLHYKKLRQPLNYILVNVSLGGFLFCIFSVF- 87

  Fly   103 PVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMARKPLTATAAVLRL 167
            .|.:...:|.::.|..:|.|....||:.|.|:.||:..:|::||.||.|........:..|:..:
  Rat    88 TVFIASCHGYFLFGRHVCALEAFLGSVAGLVTGWSLAFLAFERYLVICKPFGNIRFNSKHALTVV 152

  Fly   168 MVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWV--YLTPLLTIIFS 230
            ::.|||....::.|.|||:|::|||...:||.|::......||....:.|::  ::.||..|.||
  Rat   153 LITWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSEHYTWFLFIFCFIIPLSLICFS 217

  Fly   231 YWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTPYTIINY 295
            |:.:::.:.|             ||:.:...|...|| |.:::.:.:..:..:...:.||..:..
  Rat   218 YFQLLRTLRA-------------VAAQQQESATTQKA-EREVSHMVVVMVGSFCLCYVPYAALAM 268

  Fly   296 AGIFESMHLSPLSTI-CGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCLACGK-----DDLTS 354
            ..:....|...|..: ..:.|:|::.|.|||:|...:.:::..:.|    :.|.|     .|::.
  Rat   269 YMVNNRNHGLDLRLVTIPAFFSKSSCVYNPIIYCFMNKQFRACILE----MVCRKPMTDESDMSG 329

  Fly   355 DSRTQATAEISESQ 368
            ..:|:.:. :|.|:
  Rat   330 SQKTEVST-VSSSK 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 75/296 (25%)
TM helix 1 50..74 CDD:320207 6/26 (23%)
TM helix 2 83..105 CDD:320207 6/22 (27%)
TM helix 3 121..143 CDD:320207 7/21 (33%)
TM helix 4 165..181 CDD:320207 3/15 (20%)
TM helix 5 209..232 CDD:320207 8/24 (33%)
TM helix 6 273..295 CDD:320207 2/21 (10%)
TM helix 7 306..331 CDD:320207 8/25 (32%)
Opn1swNP_112277.2 7tmA_SWS1_opsin 33..312 CDD:320204 75/293 (26%)
TM helix 1 35..59 CDD:320204 6/23 (26%)
TM helix 2 68..90 CDD:320204 6/22 (27%)
TM helix 3 106..128 CDD:320204 7/21 (33%)
TM helix 4 150..166 CDD:320204 3/15 (20%)
TM helix 5 196..219 CDD:320204 6/22 (27%)
TM helix 6 246..268 CDD:320204 2/21 (10%)
TM helix 7 280..305 CDD:320204 8/24 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 322..346 4/22 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X120
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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