DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and opn6a

DIOPT Version :9

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001073125.1 Gene:opn6a / 780836 ZFINID:ZDB-GENE-061201-30 Length:419 Species:Danio rerio


Alignment Length:337 Identity:93/337 - (27%)
Similarity:163/337 - (48%) Gaps:30/337 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PPLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPV 104
            |||......|||..:.|||.:|..||.||:::....:....|::...:|||.||..:....:...
Zfish    26 PPLSDQGETIIGVYLLILGWLSWFGNSIVIFVLFRQRSTLQPTDYLTLNLAVSDASISVFGYSRG 90

  Fly   105 VLNGF-----YGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGM-ARKPLTATAA 163
            :|..|     .|..|...:.|::.|.|..:||..||.::|:|:..|:   :||. ..|....|.:
Zfish    91 ILEIFNIFKDSGYIISSVWTCQVDGFFTLVFGLSSINTLTVISITRF---IKGCHPHKAHCITNS 152

  Fly   164 VLRLMVVWTICGA--WALMPLFGWNRYVPEGNMTACGTDYFAKDW--WNRSYIIVYSLWVYLTPL 224
            .:.:.||:...||  |:..|:.||..|...|..| |..|:...::  .::||||...::.:|.|:
Zfish   153 TVAVCVVFIWIGAFFWSAAPVLGWGSYTDRGYGT-CEIDWVKANYSTIHKSYIISIFIFCFLVPV 216

  Fly   225 LTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTP 289
            |.::|.|..|:..|           |:.|..:.....:|:.:.||..:..|::...:.:..||:|
Zfish   217 LLMLFCYISIINTV-----------KRGNAMNADGDLSDRQRKIERDVTIVSIVICTAFILAWSP 270

  Fly   290 YTIINYAGIFESMHLSPLSTICGSVFAKANAVCNPIVY-GLSHPKYKQVLREKMPCLACGKDD-- 351
            |.:::....: ..|:..|::|...:|||:.:..||::| ||| .|:::.:...:||...|:|.  
Zfish   271 YAVVSMWSAW-GFHVPNLTSIFTRLFAKSASFYNPLIYFGLS-SKFRKDVSVLLPCGREGRDPVR 333

  Fly   352 LTSDSRTQATAE 363
            |....|.:..||
Zfish   334 LKRFKRLRGRAE 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 82/300 (27%)
TM helix 1 50..74 CDD:320207 10/23 (43%)
TM helix 2 83..105 CDD:320207 5/21 (24%)
TM helix 3 121..143 CDD:320207 8/21 (38%)
TM helix 4 165..181 CDD:320207 5/17 (29%)
TM helix 5 209..232 CDD:320207 8/22 (36%)
TM helix 6 273..295 CDD:320207 5/21 (24%)
TM helix 7 306..331 CDD:320207 10/25 (40%)
opn6aNP_001073125.1 7tm_1 50..307 CDD:278431 70/272 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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