DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and opn6a

DIOPT Version :10

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_001073125.2 Gene:opn6a / 780836 ZFINID:ZDB-GENE-061201-30 Length:419 Species:Danio rerio


Alignment Length:337 Identity:93/337 - (27%)
Similarity:163/337 - (48%) Gaps:30/337 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PPLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPV 104
            |||......|||..:.|||.:|..||.||:::....:....|::...:|||.||..:....:...
Zfish    26 PPLSDQGETIIGVYLLILGWLSWFGNSIVIFVLFRQRSTLQPTDYLTLNLAVSDASISVFGYSRG 90

  Fly   105 VLNGF-----YGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGM-ARKPLTATAA 163
            :|..|     .|..|...:.|::.|.|..:||..||.::|:|:..|:   :||. ..|....|.:
Zfish    91 ILEIFNIFKDSGYIISSVWTCQVDGFFTLVFGLSSINTLTVISITRF---IKGCHPHKAHCITNS 152

  Fly   164 VLRLMVVWTICGA--WALMPLFGWNRYVPEGNMTACGTDYFAKDW--WNRSYIIVYSLWVYLTPL 224
            .:.:.||:...||  |:..|:.||..|...|..| |..|:...::  .::||||...::.:|.|:
Zfish   153 TVAVCVVFIWIGAFFWSAAPVLGWGSYTDRGYGT-CEIDWVKANYSTIHKSYIISIFIFCFLVPV 216

  Fly   225 LTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTP 289
            |.::|.|..|:..|           |:.|..:.....:|:.:.||..:..|::...:.:..||:|
Zfish   217 LLMLFCYISIINTV-----------KRGNAMNADGDLSDRQRKIERDVTIVSIVICTAFILAWSP 270

  Fly   290 YTIINYAGIFESMHLSPLSTICGSVFAKANAVCNPIVY-GLSHPKYKQVLREKMPCLACGKDD-- 351
            |.:::....: ..|:..|::|...:|||:.:..||::| ||| .|:::.:...:||...|:|.  
Zfish   271 YAVVSMWSAW-GFHVPNLTSIFTRLFAKSASFYNPLIYFGLS-SKFRKDVSVLLPCGREGRDPVR 333

  Fly   352 LTSDSRTQATAE 363
            |....|.:..||
Zfish   334 LKRFKRLRGRAE 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 82/300 (27%)
TM helix 1 49..75 CDD:320207 11/25 (44%)
TM helix 2 82..108 CDD:320207 6/25 (24%)
TM helix 3 120..150 CDD:320207 10/29 (34%)
TM helix 4 161..181 CDD:320207 6/21 (29%)
TM helix 5 208..237 CDD:320207 10/28 (36%)
TM helix 6 267..297 CDD:320207 7/29 (24%)
TM helix 7 306..331 CDD:320207 10/25 (40%)
opn6aNP_001073125.2 None

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