DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and valopa

DIOPT Version :10

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_571661.1 Gene:valopa / 58109 ZFINID:ZDB-GENE-000427-4 Length:377 Species:Danio rerio


Alignment Length:340 Identity:87/340 - (25%)
Similarity:163/340 - (47%) Gaps:27/340 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 PAEIMHMVDPYWYQWPPLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNL 89
            |||     ||:......:.|..:.::..::.::..:||:.||.||.:....:.||.|.|..:|||
Zfish    13 PAE-----DPFSAPLSSIAPWNYSVLAALMFVVTALSLSENFTVMLVTFRFQQLRQPLNYIIVNL 72

  Fly    90 AFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMA 154
            :.:||::..|......|..::|.:.:|.:.|.|.|...:.||.|::||:.::|::|:.||.:.:.
Zfish    73 SLADFLVSLTGGSISFLTNYHGYFFLGKWACVLEGFAVTFFGIVALWSLAVLAFERFFVICRPLG 137

  Fly   155 RKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWV 219
            ...|....|.|.|:.||:....|.:.|:.||:.|......|.|..::::.::.:.::||......
Zfish   138 NIRLRGKHAALGLVFVWSFSFIWTVPPVLGWSSYTVSRIGTTCEPNWYSGNFHDHTFIITLFSTC 202

  Fly   220 YLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWF 284
            ::.||..||..|..::              :|:...|..:.....::..|.::.::.:..|..:.
Zfish   203 FIFPLGVIIVCYCKLI--------------RKLRKVSNTHGRLGNARKPERQVTRMVVVMIVAFM 253

  Fly   285 FAWTPY---TIINYAGIFESMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCLA 346
            .|||||   :||..|  ..|||:.|......:..||..||.|||:|...:.::::.|   :..|:
Zfish   254 VAWTPYAAFSIIITA--HPSMHVDPRLAAIPAFVAKTAAVYNPIIYVFMNKQFRKCL---VQLLS 313

  Fly   347 CGKDDLTSDSRTQAT 361
            |.|..:...:..|.|
Zfish   314 CSKVTVVEGNNNQTT 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 75/292 (26%)
TM helix 1 49..75 CDD:320207 6/25 (24%)
TM helix 2 82..108 CDD:320207 8/25 (32%)
TM helix 3 120..150 CDD:320207 11/29 (38%)
TM helix 4 161..181 CDD:320207 6/19 (32%)
TM helix 5 208..237 CDD:320207 7/28 (25%)
TM helix 6 267..297 CDD:320207 9/32 (28%)
TM helix 7 306..331 CDD:320207 9/24 (38%)
valopaNP_571661.1 7tmA_VA_opsin 18..308 CDD:320210 76/305 (25%)
TM helix 1 32..58 CDD:320210 6/25 (24%)
TM helix 2 65..92 CDD:320210 8/26 (31%)
TM helix 3 103..133 CDD:320210 11/29 (38%)
TM helix 4 146..164 CDD:320210 6/17 (35%)
TM helix 5 191..221 CDD:320210 7/43 (16%)
TM helix 6 236..266 CDD:320210 8/29 (28%)
TM helix 7 276..301 CDD:320210 9/24 (38%)

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