DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and valopa

DIOPT Version :9

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_571661.1 Gene:valopa / 58109 ZFINID:ZDB-GENE-000427-4 Length:377 Species:Danio rerio


Alignment Length:340 Identity:87/340 - (25%)
Similarity:163/340 - (47%) Gaps:27/340 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 PAEIMHMVDPYWYQWPPLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNL 89
            |||     ||:......:.|..:.::..::.::..:||:.||.||.:....:.||.|.|..:|||
Zfish    13 PAE-----DPFSAPLSSIAPWNYSVLAALMFVVTALSLSENFTVMLVTFRFQQLRQPLNYIIVNL 72

  Fly    90 AFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMA 154
            :.:||::..|......|..::|.:.:|.:.|.|.|...:.||.|::||:.::|::|:.||.:.:.
Zfish    73 SLADFLVSLTGGSISFLTNYHGYFFLGKWACVLEGFAVTFFGIVALWSLAVLAFERFFVICRPLG 137

  Fly   155 RKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWV 219
            ...|....|.|.|:.||:....|.:.|:.||:.|......|.|..::::.::.:.::||......
Zfish   138 NIRLRGKHAALGLVFVWSFSFIWTVPPVLGWSSYTVSRIGTTCEPNWYSGNFHDHTFIITLFSTC 202

  Fly   220 YLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWF 284
            ::.||..||..|..::              :|:...|..:.....::..|.::.::.:..|..:.
Zfish   203 FIFPLGVIIVCYCKLI--------------RKLRKVSNTHGRLGNARKPERQVTRMVVVMIVAFM 253

  Fly   285 FAWTPY---TIINYAGIFESMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCLA 346
            .|||||   :||..|  ..|||:.|......:..||..||.|||:|...:.::::.|   :..|:
Zfish   254 VAWTPYAAFSIIITA--HPSMHVDPRLAAIPAFVAKTAAVYNPIIYVFMNKQFRKCL---VQLLS 313

  Fly   347 CGKDDLTSDSRTQAT 361
            |.|..:...:..|.|
Zfish   314 CSKVTVVEGNNNQTT 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 75/292 (26%)
TM helix 1 50..74 CDD:320207 6/23 (26%)
TM helix 2 83..105 CDD:320207 7/21 (33%)
TM helix 3 121..143 CDD:320207 7/21 (33%)
TM helix 4 165..181 CDD:320207 5/15 (33%)
TM helix 5 209..232 CDD:320207 6/22 (27%)
TM helix 6 273..295 CDD:320207 8/24 (33%)
TM helix 7 306..331 CDD:320207 9/24 (38%)
valopaNP_571661.1 7tm_1 47..297 CDD:278431 72/265 (27%)
7tm_4 <95..314 CDD:304433 59/237 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X120
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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