DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and opn4a

DIOPT Version :10

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_001122233.2 Gene:opn4a / 571624 ZFINID:ZDB-GENE-070111-2 Length:593 Species:Danio rerio


Alignment Length:358 Identity:123/358 - (34%)
Similarity:195/358 - (54%) Gaps:32/358 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 MVDPYWYQWPPLEPMWFG--IIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSD 93
            ||:...|.:|.::.....  .||.||..:|...:.|||:|:|.|:.|:.||||:|:|::|||.:|
Zfish    57 MVEESVYPFPTVDVPDHAHYTIGAVILTVGITGMLGNFLVIYAFSRSRTLRTPANLFIINLAITD 121

  Fly    94 FMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMAR-KP 157
            |:|..|..|.......:..||.|...||||...|:|||..|:.::.:||.|||.||.:.:|. ..
Zfish   122 FLMCATQAPIFFTTSMHKRWIFGEKGCELYAFCGALFGICSMITLMVIAVDRYFVITRPLASIGV 186

  Fly   158 LTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLT 222
            |:...|:|.|:|.|.....|:|.|.|||:.|||||.:|:|..||.......|:|.::..::|:..
Zfish   187 LSQKRALLILLVAWVYSLGWSLPPFFGWSAYVPEGLLTSCTWDYMTFTPSVRAYTMLLFIFVFFI 251

  Fly   223 PLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAI-----EIKLAKVALTTISL 282
            ||:.||:.|:.|.:::    :...|...|:|    .:::.|..|..     |.|:||:||..|.:
Zfish   252 PLIVIIYCYFFIFRSI----RTTNEAVGKIN----GDNKRDSMKRFQRLKNEWKMAKIALIVILM 308

  Fly   283 WFFAWTPYTII---NYAGIFESMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPC 344
            :..:|:||:.:   .:||.  |..|:|......:|.|||:|:.|||:|.::||||:..:.:.:||
Zfish   309 YVISWSPYSTVALTAFAGY--SDFLTPYMNSVPAVIAKASAIHNPIIYAITHPKYRLAIAKYIPC 371

  Fly   345 ----LACGKDD-------LTSDSRTQATAEISE 366
                |...|.|       |.|..|:..|::.|:
Zfish   372 LRLLLCVPKRDLHSFHSSLMSTRRSTVTSQSSD 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 109/300 (36%)
TM helix 1 49..75 CDD:320207 11/25 (44%)
TM helix 2 82..108 CDD:320207 10/25 (40%)
TM helix 3 120..150 CDD:320207 15/29 (52%)
TM helix 4 161..181 CDD:320207 7/19 (37%)
TM helix 5 208..237 CDD:320207 9/28 (32%)
TM helix 6 267..297 CDD:320207 10/37 (27%)
TM helix 7 306..331 CDD:320207 10/24 (42%)
opn4aNP_001122233.2 7tmA_Melanopsin 76..365 CDD:320458 109/298 (37%)
TM helix 1 77..103 CDD:320458 11/25 (44%)
TM helix 2 110..136 CDD:320458 10/25 (40%)
TM helix 3 148..178 CDD:320458 15/29 (52%)
TM helix 4 190..212 CDD:320458 8/21 (38%)
TM helix 5 237..267 CDD:320458 9/29 (31%)
TM helix 6 293..323 CDD:320458 10/29 (34%)
TM helix 7 333..358 CDD:320458 10/24 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 397..449 2/8 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 547..593
Blue background indicates that the domain is not in the aligned region.

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