DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and opn8b

DIOPT Version :10

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_001303874.1 Gene:opn8b / 569628 ZFINID:ZDB-GENE-070705-120 Length:357 Species:Danio rerio


Alignment Length:308 Identity:76/308 - (24%)
Similarity:141/308 - (45%) Gaps:21/308 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 IGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWI 114
            ||..:.::..:|:.||.:|:.:.........|..:..||||.:|.....||:|..|.:.:...||
Zfish    16 IGAFLLLIAILSILGNLMVLVMAYKRSNHMKPPELLSVNLAVTDLGAAVTMYPLAVASAWNHHWI 80

  Fly   115 MGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCV-IVKGMARKPLTATAAVLRLMVVWTICGAWA 178
            .|...|..||:.|.|||..|:.::|::|..|:.| :.....::.::...|.:.:...|.....||
Zfish    81 GGDVSCVYYGLMGFLFGAASMMTLTIMAIVRFIVSLTLQSPKEKISKRNAKILVATTWLYALLWA 145

  Fly   179 LMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEK 243
            :.||.||.:|.||....:|..|:......::|::|...|...:.|.:.|:..|..|...:....|
Zfish   146 IFPLIGWGKYGPEPFGLSCTLDWRDMKEHSQSFVITIFLMNLILPAIIIVSCYCGIALRLYVTYK 210

  Fly   244 AMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFF-AWTPYTIINYAGIFESMHLSPL 307
            :|.:.....|:..::.           :|..:|: .||:.|. .|.||.|::...|:......|.
Zfish   211 SMDDSNHVPNMIKMQR-----------RLMVIAV-LISIGFVGCWAPYGIVSLWSIYRPGDSIPA 263

  Fly   308 S-TICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCLA--CGKDDL 352
            . ::...:|||.:.|.||.:|.:....:|:.:.:    |:  ||:.::
Zfish   264 EVSMLPCLFAKTSTVYNPFIYYIFSKTFKREVNQ----LSRFCGRSNI 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 73/290 (25%)
TM helix 1 49..75 CDD:320207 6/24 (25%)
TM helix 2 82..108 CDD:320207 9/25 (36%)
TM helix 3 120..150 CDD:320207 12/30 (40%)
TM helix 4 161..181 CDD:320207 4/19 (21%)
TM helix 5 208..237 CDD:320207 7/28 (25%)
TM helix 6 267..297 CDD:320207 9/30 (30%)
TM helix 7 306..331 CDD:320207 8/25 (32%)
opn8bNP_001303874.1 7tm_GPCRs 30..295 CDD:475119 70/276 (25%)
TM helix 2 49..71 CDD:410628 8/21 (38%)
TM helix 3 87..109 CDD:410628 8/21 (38%)
TM helix 4 132..148 CDD:410628 3/15 (20%)
TM helix 5 176..199 CDD:410628 5/22 (23%)
TM helix 6 229..251 CDD:410628 8/22 (36%)
TM helix 7 263..288 CDD:410628 7/24 (29%)

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