DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and ninaE

DIOPT Version :9

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster


Alignment Length:365 Identity:190/365 - (52%)
Similarity:262/365 - (71%) Gaps:6/365 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PSFAYMRDGRNLSLAESVPAEIMHMVDPYWYQWPPLEPMWFGIIGFVIAILGTMSLAGNFIVMYI 71
            |.||.:.:|   |:.:.|..::.|::.|||.|:|.::|:|..|:...:.::|.:|..||.:|:||
  Fly    13 PHFAPLSNG---SVVDKVTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYI 74

  Fly    72 FTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIW 136
            |.::|.||||:|:.|:|||.|||.:|.|..|.:.:|.::.||::||.:|::|...||.|||.|||
  Fly    75 FATTKSLRTPANLLVINLAISDFGIMITNTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIW 139

  Fly   137 SMTLIAYDRYCVIVKGMARKPLTATAAVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDY 201
            ||.:|:.|||.|||||||.:|:|...|:.::..:|.:...|.|.|.|||:|||||||:|:||.||
  Fly   140 SMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIWCLAPAFGWSRYVPEGNLTSCGIDY 204

  Fly   202 FAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSK 266
            ..:||..|||:|.||::||..||..|.:|||.|:.||:|||||||||||||||.|||:|| |..|
  Fly   205 LERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSSE-DAEK 268

  Fly   267 AIEIKLAKVALTTISLWFFAWTPYTIINYAGIFESMHLSPLSTICGSVFAKANAVCNPIVYGLSH 331
            :.|.|||||||.||:|||.|||||.:||..|:|:...|:||:||.|:.|||:.|..||||||:||
  Fly   269 SAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFEGLTPLNTIWGACFAKSAACYNPIVYGISH 333

  Fly   332 PKYKQVLREKMPCLACGK--DDLTSDSRTQATAEISESQA 369
            |||:..|:||.||...||  |..:||:::||||..:||:|
  Fly   334 PKYRLALKEKCPCCVFGKVDDGKSSDAQSQATASEAESKA 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 159/289 (55%)
TM helix 1 50..74 CDD:320207 8/23 (35%)
TM helix 2 83..105 CDD:320207 11/21 (52%)
TM helix 3 121..143 CDD:320207 12/21 (57%)
TM helix 4 165..181 CDD:320207 3/15 (20%)
TM helix 5 209..232 CDD:320207 12/22 (55%)
TM helix 6 273..295 CDD:320207 16/21 (76%)
TM helix 7 306..331 CDD:320207 15/24 (63%)
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 159/288 (55%)
TM helix 1 53..77 CDD:320207 8/23 (35%)
TM helix 2 86..108 CDD:320207 11/21 (52%)
TM helix 3 124..146 CDD:320207 12/21 (57%)
TM helix 4 168..184 CDD:320207 3/15 (20%)
TM helix 5 212..235 CDD:320207 12/22 (55%)
TM helix 6 275..297 CDD:320207 16/21 (76%)
TM helix 7 308..333 CDD:320207 15/24 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461664
Domainoid 1 1.000 192 1.000 Domainoid score I3159
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I3623
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48050
OrthoDB 1 1.010 - - D389088at33208
OrthoFinder 1 1.000 - - FOG0001799
OrthoInspector 1 1.000 - - mtm6356
orthoMCL 1 0.900 - - OOG6_104608
Panther 1 1.100 - - P PTHR24240
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4703
SonicParanoid 1 1.000 - - X120
1211.940

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